Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03482 ATGGAATTCTTACCCTTCCTATTATTTTCAACAAGTTTCATTCTCTTCCTCATTCAAATTCTAAACGCAAGAAAAAGAATACCAAAAGTCACAAACAAGACACAAAAAAACCTACCACCTGGTCCATGGAACCTTCCAATCATAGGAAGCATCCACCACCTTATTGGCTCTCTACCTCATCACCGTTTGAAACATCTCTCCAAAATCCATGGCCCTATCATGCACCTTAAACTAGGTGAAGTATCAACCATAGTAATTTCTTCACCAAAATTTGCCAAAGAGATTCTCAAAACCTATGACTCAACCTTTGCTCAAAGACCACATCAAATTGGAGCAGACATCATGTGTTACGGTTCCACTGACATTGCGACGGCACCTTACGGAAGCTATTGGAAACAACTAAGAAGATTATGTTCACAAGAGCTTCTTTGTACAAAACGTGTGAGATCATTTCAATCAATTAGAGAACAAGAAGTATCTCATTTAGTCAAATATATTTCTAATAACATTGGATCATGTATTAACTTGAGTGAAAAAGTTACATGCATGACAAGTGCAATAACTTCAAGAGCTGCTTTTGGTAAAATATGTAAAGATCAACAAGAATTTCTTTTGTTGATTAAGAAACTTGTGAAAATGGCTGAAGGTTTTATTGTCATTGATTTGTTTCCTTCTCAAAAGTGGTTGCATGTGATTAGTGGGATGAAGCCTAAGTTGGAGGAGTTGCATAAAAAATTTGATAATATTATTGAAAATATAATCAAAGAGGCAGTAGAAAAAAGTTATGATGAAGGAGAGACAGTAGAGGGATTTCTTTCTGTTCTTCTTAGGATTAAAGATCATGATGATGCTCTTGAGTGTCCTTTAACTATCGATAACATCAAAGCTGTTATTTTGGACATGTTTGTTGCTGGAAGTGATACATCATCTGCCATTATAGAATGGGCCATTTCAGAAATGCTGAAAAACCCAACAGTGATGATCAAAGCTCAACAAGAAGTAAGAGGACATTTTGGCACCAAAGGATACATTGATGAAGCATCTCTTCATGAACTCAAATATCTAAAAGCAACCATCAAAGAAACACTGAGATTACACCCTCCTTTCCCTCTTCTTCTCCCAAGAGAATGCAGAGAAACATGTGAGATTCATGGATACACAATACATGCAGGAAACAAAGTTATAGTAAATGCATGGGCAATTGGAAGAGATCCTGAGTATTGGACAGATGCAGAGATGTTTATTCCAGAGAGATTTTTGGATTCTGCAATTGATTATAAAGGTTTGAATATCGAGTATATACCATTCGGTGCTGGAAGGAGAATTTGTCCGGGGATTTTATTTGGTGTGTCGAGTATTGAACTCTCTCTTGCAGAACTTCTTTATCATTTTAATTGGGAACTTCCTAGTGGATTAACTTTGGAAAATCTAGAAATGACTGAAGCCTTGAGTTCTTCGTCGAGAAGGAAAACTGATCTGATACTAGTTCCTGTTTCTTGCTACAATAATGTACCTGCTTCGTAA 1524 0.3635 MEFLPFLLFSTSFILFLIQILNARKRIPKVTNKTQKNLPPGPWNLPIIGSIHHLIGSLPHHRLKHLSKIHGPIMHLKLGEVSTIVISSPKFAKEILKTYDSTFAQRPHQIGADIMCYGSTDIATAPYGSYWKQLRRLCSQELLCTKRVRSFQSIREQEVSHLVKYISNNIGSCINLSEKVTCMTSAITSRAAFGKICKDQQEFLLLIKKLVKMAEGFIVIDLFPSQKWLHVISGMKPKLEELHKKFDNIIENIIKEAVEKSYDEGETVEGFLSVLLRIKDHDDALECPLTIDNIKAVILDMFVAGSDTSSAIIEWAISEMLKNPTVMIKAQQEVRGHFGTKGYIDEASLHELKYLKATIKETLRLHPPFPLLLPRECRETCEIHGYTIHAGNKVIVNAWAIGRDPEYWTDAEMFIPERFLDSAIDYKGLNIEYIPFGAGRRICPGILFGVSSIELSLAELLYHFNWELPSGLTLENLEMTEALSSSSRRKTDLILVPVSCYNNVPAS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03482 507 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03482 507 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03482 507 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03482 507 FunFam Cytochrome P450 99A2 28 498 - -
Vifa1g03482 507 PANTHER OS08G0105600 PROTEIN 61 498 - -
Vifa1g03482 507 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03482 507 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03482 507 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03482 507 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03482 507 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03482 507 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03482 507 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03482 507 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03482 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Vifa1g03482 507 CDD CYP71-like 70 493 - -
Vifa1g03482 507 Pfam Cytochrome P450 39 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03482 507 SUPERFAMILY Cytochrome P450 39 484 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03482 507 Gene3D Cytochrome P450 30 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03482 Vifa-Chr1 541886710 541888323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03482 39 498 Cytochrome P450 AT5G57260 40.552 5.52e-123 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03482 - K23807 gmx:100779851 692.189