Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03478 ATGCAGAAAGATCAACTCAAAAAGGATATTAAAGAGGTAAAGTTTTTCACTGAGTACGGAGAAGCCAACAGATACAAAATTCTGGAAGTGATTGGTAAGGGCAGCTACGGAGTTGTTTGTGCAGCAATTGACACACACACTGGTGGAAAAGTTGCAATCAAGAAGATTCATGATGTTTTTGAACATAACTGCGATGCCATTAGAATCCTCAGGGAAGTCAAGTTGCTAAGACTTTTAAGACACCCTGATATTGTTGAGATTAAGCGGATTATGTTGCCGCCTTCAAAGAGGGAATTTAAAGATATTTATGTTGTATTTGAGCTCATGGAGTCTGATCTCCATCAAGTCATCAAAGCTAACGATGACTTGACCCGTGAACACCAGCAGTTTTTTCTTTATCAGATGCTTCGGGCTTTGAAGTTTATGCATACAGCAAATGTATATCATAGAGACCTTAAGCCGAAGAATATACTGGCAAATGCAAACTGCAAACTCAAAGTCTGTGATTTTGGACTTGCTCGAGTTGCATTCAATGATACCCCAACAACAACTTTTTGGACGGATTATGTTGCTACAAGATGGTATAGAGCCCCTGAGCTATGCGGCTCTTTCTTTGCTAAGTATGTTTTCCGAGGGAGGACTATTGATCTCTCCTGGAAGTTGAATTTATCCGTGCTTCAGTACACGCCTGCGATTGATATATGGAGCATTGGATGCATTTTTGCTGAAGTGCTGACAGGAAAGCCATTGTTTCCTGGTAAAAGTATCGTGCATCAATTAGACTTGATCACTGATCTTCTTGGAACACCACCATCCGAAATTATTGCAGGAGTTCGAAATGAGAAGGCAAGGAAGTACTTGATGGATATGCGGAAGAAATTTCCTGTGCCATTTGAACGAAAATTTCCAAATGCTGATCCATTGGCACTTCGCCTATTGCAAAGGCTTTTGGCCTTCGATCCAAAGGATCGGCCGACAGCTCAAGAGGCACTAGCTGATGCTTTCTTCAAGGGTTTGGCCAAAATTGAGAGAGAGCCTTTGTCTCAGCCAATTTCAAGAATGGAGTTTGAGTTCGAGAGAAGGCGGGTGTCAAAAGATGATATTAAGGAACTGATATATCGGGAAATACTGGAATATCATCCACAGCTGCTTAAAGATTACAAAAATGGAACTGAAGGCATAAGCTTCATGTACCCTAGTGCAATAGACCAGTTCAGAAAGCAATTTGCTTATCTTGAAGAGAATAATGGTAAATGTGGTCCGGTGATTCCTCCAGCAAGGAAGCATGTCTCCCTTCCGAGGTCCACTGTTCTCTCTAGTACAATTCCTCCCAGTAAGCAACCATCTTTTGCTCCATACGCCAACAAGCATATTGCACAAGAGGCATTCAAAATTTCTAGAGCTGCAGAATCTAATTCTTTAAGTCAATCAAAGGGTTTGCGGCCTCCTCCAAGAGCGCCCGCAGCCAAACCAGGTAGAAGTATAGGGCCAGTTCACTGTGACAATGGAGTTCACTGTGACAATGGGAGAAGCACAAAAGATAATTATGATGCAAGAATCTTCTACCAAAATACTATTCCTCAATCAATCTCCCCACACCCTTTCCAAAGGGTTGTTCACGCACAACAAAATTACAAGGATAATTCACAAGGCAAACATCAACCCTCACCACAGATGCGTAGCGTGCCAGCCAGACCAGCTATCGATCTTAATACCAATCCGTATCACCATCGGCAGGCAAAGAATGATCTGTTAAACGATCCTGTCACTGTTATTGATGCTAAATTGTTGCAAGCACAATCTCAATTTGGTGCAGCTGGTGCTGCAGCAGTCGCTGTTGCTGCTCACGGGCATTCTGCAGGCTTTTAG 1869 0.4254 MQKDQLKKDIKEVKFFTEYGEANRYKILEVIGKGSYGVVCAAIDTHTGGKVAIKKIHDVFEHNCDAIRILREVKLLRLLRHPDIVEIKRIMLPPSKREFKDIYVVFELMESDLHQVIKANDDLTREHQQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFNDTPTTTFWTDYVATRWYRAPELCGSFFAKYVFRGRTIDLSWKLNLSVLQYTPAIDIWSIGCIFAEVLTGKPLFPGKSIVHQLDLITDLLGTPPSEIIAGVRNEKARKYLMDMRKKFPVPFERKFPNADPLALRLLQRLLAFDPKDRPTAQEALADAFFKGLAKIEREPLSQPISRMEFEFERRRVSKDDIKELIYREILEYHPQLLKDYKNGTEGISFMYPSAIDQFRKQFAYLEENNGKCGPVIPPARKHVSLPRSTVLSSTIPPSKQPSFAPYANKHIAQEAFKISRAAESNSLSQSKGLRPPPRAPAAKPGRSIGPVHCDNGVHCDNGRSTKDNYDARIFYQNTIPQSISPHPFQRVVHAQQNYKDNSQGKHQPSPQMRSVPARPAIDLNTNPYHHRQAKNDLLNDPVTVIDAKLLQAQSQFGAAGAAAVAVAAHGHSAGF 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03478 622 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vifa1g03478 622 FunFam Mitogen-activated protein kinase 111 359 - -
Vifa1g03478 622 FunFam Mitogen-activated protein kinase 14 119 - -
Vifa1g03478 622 MobiDBLite consensus disorder prediction 469 496 - -
Vifa1g03478 622 SMART serkin_6 25 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03478 622 Pfam Protein kinase domain 25 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03478 622 Gene3D Phosphorylase Kinase; domain 1 360 382 - -
Vifa1g03478 622 Gene3D Phosphorylase Kinase; domain 1 40 110 - -
Vifa1g03478 622 ProSiteProfiles Protein kinase domain profile. 25 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03478 622 Gene3D Transferase(Phosphotransferase) domain 1 111 208 - -
Vifa1g03478 622 Gene3D Transferase(Phosphotransferase) domain 1 223 359 - -
Vifa1g03478 622 CDD STKc_TDY_MAPK 24 381 - -
Vifa1g03478 622 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vifa1g03478 622 SUPERFAMILY Protein kinase-like (PK-like) 19 340 IPR011009 -
Vifa1g03478 622 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03478 Vifa-Chr1 541052854 541058660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03478 1 604 MAP Kinase Gene Family AT1G53510 65.968 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vifa1g03478 Pkinase 1.2e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03478 - - gmx:100800878 941.414