Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03476 ATGTTGTTTTCTTTGTCTTATTCCACTTCACTCATGAACCTTGCTACTGGTTTTGATTTTCTTCTTAAACCCATTTTCCTTCATGGGTTGTCTAGTGTTCTACATATACTGTTGCTGGTGGGGGTTTTGGTTTCATGGGTTTGGAAAAGGGTTGTAGCTGGTGTTGGGAATGGGACTAAGGAGGAGAAACCAAATAGTACTTTGTTTAAAGTGACAAAGTTTTGTTGTTTTGGTTTTTCTTCTTTCAATTTTGTTTTGCTTCTTGTTAATTACTTTTACTGGTATACTAGTGGTTGGTCAGAAGAAAGGCTTGTTACCCTTATTGATTTAGGTTTGAAAACAGTTGTTTGGTGTGTTGTCTGTGTTTGCTTTCACAAAGGGTTCTTTGTTTTCTTCAGTTCAAGTCAGAGAAAAAGAAGGTTTCCAGTTTTCTTCAGAGCTTGGTGTGTCTTCTATCTCTTTGTTTCATGTTATTGCTTTGTGGTTGACATTGTTGTTTTGTATGAAAATCGCGTTGAGTTAACCGTTCGATGCATTGTTTCTGATGTGGTTTCGGTTTGTGTTGGGTTGTTCTTTTATTATGTGGGGTTTTGTGTGAAAAATGAGAGTGGAGAAGAAGGTGATAGAACTCTTCAAGAACCTCTCTTGAATGGTGATACACATATTGGTAATGGTAATGGTAATGGCTTGGAGTTGAAAGAGACTAAAGGGGGTGACACTCTTACCCCTTATTCAAATGCTGGAATTTTGAGCCTTCTTACTTTCACATGGGTGGGTCCATTGATAGCATTTGGCAATAAGAAAATCTTAGACCTTGAGGATATTCCTCAGCTAGATAGTGGAGATAGTGTGGTTGGAGCTTTTCCAGCTTTTAGTGAAAAACTTGAAGGTGATTGTGGTACTATCAATAGAGTAACCTCACTTATGTTGGTTAAGTCAATACTAATCTCAGGGTGGAAAGAGATTCTTTTCACAGCATTTCTTGCACTGTTAAACACTTTTGCTAGTTATGTCGGTCCTTATCTTATCGATTCTCTTGTTCAATATCTTAATGGAAAAAGGCTTTATGAGAATCAAGGCTATGTCTTGGTTTCTGCGTTTTTTCTTGCAAAGGTTGTAGAGTGCTTAACACAAAGGCATTGGTTCTTTAGGTTGCAGCAACTCGGACTTCGTATCCGAGGACTGCTTGTGACTATGATATATAAAAAAACCTTAACACTTTCATGCCAATCAAGGCAATGTCACACTTCTGGAGAAATAATCAATTTCATGACTGTTGATGCTGAAAGAGTTGGTATATTCAGTTGGTACATGCATGATATGTGGTTAGTAGTTTTGCAAGTTGCATTGGCGTTGTTGATTTTGTATAAAAACCTTGGACCTGCTTCGATTGCTGCTTTTGTTACGACCATCATTATTATGTTGGCCAATGTTCCTTTAGGATCGTTGCAAGAGAAGTTTCAAAAGAAGTTGATGGAGTCAAAGGATACAAGAATGAAGACGACGTCTGAAATTTTGAGGAACATGAGGATCCTTAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACCGAGCTCAGGGACACGGAACAAGGCTGGTTGAAAAAATTTGTTTATACTTCAGCCATAACTACATTTGTCTTTTGGGGTGCACCTACATTAGTATCCGTGGTTACTTTCGGTACTTGTATGGTTATAGGGGTCCCACTTGAATCCGGGAAGATTCTGTCAGCACTTGCAACAATCAGGATTCTTCAACAGCCTATTTATAATCTTCCAGATTTAATTTCAATGATAGCACAAACTAAAGTTTCTATTGATAGGATCGCGTCGTTCCTTCGTCTCGAAGACTTGCAGTCTGATGTTGTAGAAAGGCTTTCTCGGGGTAGTTCTGATACGGCAATTGAAGTGGACGATGGGAATTTTTCATGGGATTTATCTTTGCCTAATCCAACTTTACAGAACTTAAATCTCAAAGTTTTTCACGGCATGAAGGTTGCGGTTTGTGGTACTGTTGGATCAGGCAAGTCGACTTTACTCTCTTGTCTACTCGGAGAAGTTCCAAAGGTATCAGGTACCGTTAAGGTTTGTGGGACAAAGGCTTATGTTGCTCAATCGCCGTGGATTCAAAGTGGCAAGATAGAGGATAATATATTGTTTGGTGAAGAAATGGTTAGGGAAAGGTATGAGAAGGTACTTGAAGCATGCTCCTTGAAGAAGGATTTGGAAATCTTGTCATTTGGTGATCAGACGGTTATAGGCGAGCGTGGGATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGAGCTCTTTACCAAGATGCTGATATCTATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTCAAGGAATGCTTGCTGGGCGTTTTAAGTTCGAAAACAGTTGTTTATGTTACCCATCAAGTGGAGTTCTTACCTACTGCCGATCTTATATTGGTCATGAAAGATGGAAAAATAACTCAAAGTGGAAAGTATGCTGATTTGCTTAACATTGGAACCGATTTTATGGAACTTGTTGGTGCACACAGAGAAGCTTTGTCTACACTTGAATCATCGGGTGAGGGAAAAGAGTCTAATGAAATAAGTAAATTAGAACCAGAAGTAACTATCTCTGGCACTCATGAAGAAGTAAACAAAAATGAGCAAAATGGTAAAGCAGATGATGATACGGGCGAACCAAAAGGCCAACTCGTTCAAGATGAAGAAAGGGTGAAAGGTAAAGTTGGGCTTTCAGTCTATTGGAAGTATATCACAACTGCATATGGAGGAGCTCTCGCACCGTTCATAATATTGGCTCAGATTCTTTTTCAAACTCTTCAAATTGGAAGCGACTATTGGATGGCTTGGGCAACTCCGGCCTCAGCAGATGTAGAGCAACCAGTTAACGGAACAACTCTTATTGAAGTCTATGTTGGTTTGGCCGTTGGAAGTGCTTTATGCATTCTTGTTAGAGCATTGTTACTTGTTACATTCGGCTATAAGACAGCTACTATACTCTTCAATAAAATGCACTTGGCCATTTTTCGCGCCCCAATGTCGTTTTTTGATTCTACTCCAAGTGGCCGAATCCTTAATAGAGCTTCAACTGATCAAAGTGCAGTGGATACAGACATTCCTTATCAAATTGGCTCATTTGCCTTCTCCTTGATCCTGCTTCTAGGAATTATAATAGTGATGTCTCAAGTCGCATGGCAAGTTTTCATCGTCTTTATACCAGTGATAGCAATTAGCATTTACTATCAGCGATTCTATTTACCATCAGCTCGTGAACTATCACGTTTATGCGGAGTATGCAAAGCTCCTATCATTCAACACTTTGCGGAAACAATTTCCGGTACTTCAACCATTAGAAGCTTTGATCAACAGTCAAGATTTCATGCAGCAAACATGAAACTGACGGATGGATATAGTCGGCCAAAGTTCAATATTGCTGCTGCAATGGAATGGTTATGCATCCGGTTAGATATGATGTCCTCCATCACATTTGTCTCTTCCTTGATGTTCTTGATATCGATTCCACCGGGAATCATAAATCCAGGCCTTGCTGGTCTAGCTGTTACCTATGGACTGAATTTAAACCAAATTCAAGCTTGGGTGATATGGAATATTTGCAACTTGGAGAATAAAATTATATCTGTAGAAAGGATACTTCAATATACAAGCATTCAAAGTGAGCCTCCCCTTGTTTTAGAAGAAGAAAATAGGCCAGCTGCTTCTTGGCCTGCATATGGCGAGGTTGATATACGGAACTTGCAGGTTCGATATGCTTCACATCTTCCGCTTGTGTTGCGTGGCCTGACATGCACGTTTCGTGGAGGATTGAAAACTGGCATTGTTGGAAGAACAGGAAGTGGCAAATCAACTCTTATACAAACACTTTTTCGACTCATTGAGCCTACTGCCGGGGAAGTTATCATTGACAGCATCAACATCTCCGCAATCGGACTGCATGATTTGAGGTCTAGACTAAGCATCATTCCGCAGGACCCAACAATGTTCGAGGGGACTGTGAGAAGTAATCTAGACCCTCTTGAAGAGTACAACGATGATCAAATATGGGAGGCCTTGGATAAGTGTCAACTCGGAGACGAAGTTAGAAAGAAAGAAGGAAAGCTTGACTCATCAGTTACTGAGAATGGTGAGAATTGGAGCATGGGTCAGAGGCAATTGGTTTGCCTTGGCAGGGTTCTGCTTAAGAAGAGCAAGATTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAACAAACTCTTAGGAAGCATTTCACTGACTCTACTGTCATTACCATCGCACACCGAATAACTTCTGTTCTTGATAGTGATATGGTTCTACTTCTTGATCAAGGACTTATTGAGGAGTATGACTCACCAACCACATTGTTAGAAGATAAGTCATCGTCTTTTGCTAAGCTTGTTGCAGAGTATACCATGAGGTCCAACTCCAATTTTGAAGTCGACCGTCCGAAATAA 4548 0.3993 MLFSLSYSTSLMNLATGFDFLLKPIFLHGLSSVLHILLLVGVLVSWVWKRVVAGVGNGTKEEKPNSTLFKVTKFCCFGFSSFNFVLLLVNYFYWYTSGWSEERLVTLIDLGLKTVVWCVVCVCFHKGFFVFFSSSQRKRRFPVFFRAWCVFYLFVSCYCFVVDIVVLYENRVELTVRCIVSDVVSVCVGLFFYYVGFCVKNESGEEGDRTLQEPLLNGDTHIGNGNGNGLELKETKGGDTLTPYSNAGILSLLTFTWVGPLIAFGNKKILDLEDIPQLDSGDSVVGAFPAFSEKLEGDCGTINRVTSLMLVKSILISGWKEILFTAFLALLNTFASYVGPYLIDSLVQYLNGKRLYENQGYVLVSAFFLAKVVECLTQRHWFFRLQQLGLRIRGLLVTMIYKKTLTLSCQSRQCHTSGEIINFMTVDAERVGIFSWYMHDMWLVVLQVALALLILYKNLGPASIAAFVTTIIIMLANVPLGSLQEKFQKKLMESKDTRMKTTSEILRNMRILKLQGWEMKFLSKITELRDTEQGWLKKFVYTSAITTFVFWGAPTLVSVVTFGTCMVIGVPLESGKILSALATIRILQQPIYNLPDLISMIAQTKVSIDRIASFLRLEDLQSDVVERLSRGSSDTAIEVDDGNFSWDLSLPNPTLQNLNLKVFHGMKVAVCGTVGSGKSTLLSCLLGEVPKVSGTVKVCGTKAYVAQSPWIQSGKIEDNILFGEEMVRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGVLSSKTVVYVTHQVEFLPTADLILVMKDGKITQSGKYADLLNIGTDFMELVGAHREALSTLESSGEGKESNEISKLEPEVTISGTHEEVNKNEQNGKADDDTGEPKGQLVQDEERVKGKVGLSVYWKYITTAYGGALAPFIILAQILFQTLQIGSDYWMAWATPASADVEQPVNGTTLIEVYVGLAVGSALCILVRALLLVTFGYKTATILFNKMHLAIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIGSFAFSLILLLGIIIVMSQVAWQVFIVFIPVIAISIYYQRFYLPSARELSRLCGVCKAPIIQHFAETISGTSTIRSFDQQSRFHAANMKLTDGYSRPKFNIAAAMEWLCIRLDMMSSITFVSSLMFLISIPPGIINPGLAGLAVTYGLNLNQIQAWVIWNICNLENKIISVERILQYTSIQSEPPLVLEEENRPAASWPAYGEVDIRNLQVRYASHLPLVLRGLTCTFRGGLKTGIVGRTGSGKSTLIQTLFRLIEPTAGEVIIDSINISAIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYNDDQIWEALDKCQLGDEVRKKEGKLDSSVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLRKHFTDSTVITIAHRITSVLDSDMVLLLDQGLIEEYDSPTTLLEDKSSSFAKLVAEYTMRSNSNFEVDRPK 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03476 1515 Pfam ABC transporter 1283 1430 IPR003439 GO:0005524
Vifa1g03476 1515 Gene3D ABC transporter type 1, transmembrane domain 909 1245 IPR036640 GO:0005524|GO:0016020
Vifa1g03476 1515 Gene3D ABC transporter type 1, transmembrane domain 313 612 IPR036640 GO:0005524|GO:0016020
Vifa1g03476 1515 FunFam ABC transporter C family member 5 622 869 - -
Vifa1g03476 1515 CDD ABC_6TM_ABCC_D2 947 1239 IPR044726 GO:0140359
Vifa1g03476 1515 ProSitePatterns ABC transporters family signature. 762 776 IPR017871 GO:0005524|GO:0016887
Vifa1g03476 1515 CDD ABC_6TM_ABCC_D1 324 611 IPR044746 GO:0140359
Vifa1g03476 1515 Pfam ABC transporter transmembrane region 323 590 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g03476 1515 Pfam ABC transporter transmembrane region 948 1188 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g03476 1515 SUPERFAMILY ABC transporter transmembrane region 316 618 IPR036640 GO:0005524|GO:0016020
Vifa1g03476 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 637 860 IPR003439 GO:0005524
Vifa1g03476 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1267 1499 IPR003439 GO:0005524
Vifa1g03476 1515 MobiDBLite consensus disorder prediction 875 915 - -
Vifa1g03476 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 859 IPR027417 -
Vifa1g03476 1515 SUPERFAMILY ABC transporter transmembrane region 947 1244 IPR036640 GO:0005524|GO:0016020
Vifa1g03476 1515 FunFam ABC transporter C family member 5 908 1245 - -
Vifa1g03476 1515 CDD ABCC_MRP_domain2 1263 1483 - -
Vifa1g03476 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 947 1227 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g03476 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1255 1494 IPR027417 -
Vifa1g03476 1515 CDD ABCC_MRP_domain1 637 837 - -
Vifa1g03476 1515 Gene3D - 1247 1501 IPR027417 -
Vifa1g03476 1515 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 244 1500 - -
Vifa1g03476 1515 MobiDBLite consensus disorder prediction 868 915 - -
Vifa1g03476 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 323 603 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g03476 1515 Pfam ABC transporter 655 789 IPR003439 GO:0005524
Vifa1g03476 1515 FunFam ABC transporter C family member 3 1248 1500 - -
Vifa1g03476 1515 Gene3D - 613 883 IPR027417 -
Vifa1g03476 1515 SMART AAA_5 1291 1476 IPR003593 GO:0016887
Vifa1g03476 1515 SMART AAA_5 664 837 IPR003593 GO:0016887
Vifa1g03476 1515 FunFam ABC transporter C family member 10 306 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03476 Vifa-Chr1 541050211 541055980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03476 637 893 Calmodulin-binding Proteins AT2G36910 29.286 2.11e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03476 - K05666 gmx:100777836 2353.17