Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03464 ATGTCTAAATTTTTAACTCTCCACTCTTACAATCCTTTCATCTTTCTTCCAAATTCTTCCCCCAAATCTCCTTTTTATTCTTCCTTCTCCAACCGAACCACCTTCACTGTGTTTTGTACTCATTCTAATCCTAACATTATCAAAACCAACGGAAGATTAATCTATGGAAAACCCCTCTCACCCTACGACTCTGATGATGAAATGTACCAAGAAGAAGACGATGATGATGATGATGATGATGATTTCTTCTCTGATGAGGAATTTGCTGAGTCTGCTGATTTTGATGCTAAAGACAAGAAATCAAAGACTCTTGCAGGTGGGAAATTGGTTAACAATGGACAAAGTAGTAAATTGTCCAAAAGTCGGAGAATAGCGTACTTACAACAAAATAAGAGTCCAAAGTTTGGTAGAAGTTCTGTGGGGGAAAGATATCCAGAGTTGTCTGAACAGATTGATTTGGATGTGAAATGGTTACCGCTTCTTGATTATTTAAGCACGTTTGGAATCAGTGAATCACAATTGGTCCAAATTTACGGGAAGCACAAGTCGGCGTTTCAAGTCAATGTATCTTCTGCACGGGAAAAGTTAGATTACTTAATGAGCCTTGGAGTTAAACATAAAGATATAAAAAGAATCCTTTTGCGGCAACCACAAATTATCGGTGTTGAGAAATCGCTGAAACCAACAGTGAGATATTTAGTTGAGGAAGTTGGAATCAATGAAAAAATTTTGGGTAAAGTTATTCAACTGAGCCCTCGAGTTCTAGTCCAGAGTATTGACATTTCGTGGAATACTCGACTTTTGTTCTTTACCAAAGAGTTGGGTGCGTCAAAAGAGAGCATTGTGAAGATGGTGACAAAACACCCCCAGCTTCTCCATTACAGCATTGATGACGGATTGCTTCCAAGAATAAATTTCCTAAGGAGCATAGGAATGAAAAATGCCGACATCTTGAAAATCTTGACTAGCCTTACACAGGTGCTATCGCTGTCATTGGAGGCTAATCTAAAGCCTAAGTATTTGTACTTGGTGAATGAACTTCACAATGAGGCGCAATCTCTGACCAAATATCCTATGTACCTAAGCTTGTCTTTGGAACAGAGAATTCGCCCTCGCCATAGGTTCTTGGTTTTGCTAAAGAAAGCCCCCAAAGGACCATTTCCTCTAGGATCTCTAATCCCAACTGATGAAAGCTTTTGTCAAAAATGGGCTGGAACTACTCTTGATAAGTATATGGCTTTTCGTCAGAGATCTTCGCTCAAAAATCTAGCTGAGAAATATAAAAGAAAAATGTGA 1296 0.3873 MSKFLTLHSYNPFIFLPNSSPKSPFYSSFSNRTTFTVFCTHSNPNIIKTNGRLIYGKPLSPYDSDDEMYQEEDDDDDDDDDFFSDEEFAESADFDAKDKKSKTLAGGKLVNNGQSSKLSKSRRIAYLQQNKSPKFGRSSVGERYPELSEQIDLDVKWLPLLDYLSTFGISESQLVQIYGKHKSAFQVNVSSAREKLDYLMSLGVKHKDIKRILLRQPQIIGVEKSLKPTVRYLVEEVGINEKILGKVIQLSPRVLVQSIDISWNTRLLFFTKELGASKESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLEANLKPKYLYLVNELHNEAQSLTKYPMYLSLSLEQRIRPRHRFLVLLKKAPKGPFPLGSLIPTDESFCQKWAGTTLDKYMAFRQRSSLKNLAEKYKRKM 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03464 431 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Vifa1g03464 431 SMART mt_12 318 350 IPR003690 GO:0003690|GO:0006355
Vifa1g03464 431 SMART mt_12 245 277 IPR003690 GO:0003690|GO:0006355
Vifa1g03464 431 SMART mt_12 175 205 IPR003690 GO:0003690|GO:0006355
Vifa1g03464 431 SMART mt_12 210 240 IPR003690 GO:0003690|GO:0006355
Vifa1g03464 431 SMART mt_12 351 383 IPR003690 GO:0003690|GO:0006355
Vifa1g03464 431 Pfam mTERF 160 377 IPR003690 GO:0003690|GO:0006355
Vifa1g03464 431 PANTHER CGI-12 PROTEIN-RELATED 222 325 IPR003690 GO:0003690|GO:0006355
Vifa1g03464 431 MobiDBLite consensus disorder prediction 63 82 - -
Vifa1g03464 431 Gene3D Transcription termination factor 3, mitochondrial 193 417 IPR038538 -
Vifa1g03464 431 MobiDBLite consensus disorder prediction 65 82 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g03464 mTERF 4.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03464 K15032 - gmx:100809638 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03464 1 539248525 539250566 Vifa1g03464 1 539248525 539250566 ECH