Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03460 ATGGATTTTCTCAACTATTTTTCCAAAATTACCTACATGTACTCCTTTCTCTTCTTTTTGGCGCTGTTAAAAATAGTAAAAACATGGAGTTGTAAAAAATCCATTGTTAATTTACCACCAGGACCATCGACACTGCCTATTATAGGAAACATACATCAGGTATTTAGCAGCTCAACGCCTCAACATTGCTGTAAAAATTTGGCAAAGAAATATGGACCTTTGATGCACCTAAAACTTGGTCAAGTAGCACACATAATAGTTAGTTCACCAGAAATGGCAAAAGAGATCATGAAAACACAAGACCTGGTATTTAGTGATAGGCCAAACCTTATGTTGTTCAGAATATTTAGTTATGATACTAGAGATATTGCTTTCTCTGCATATGGAGAATATTGGAAACAATTGCGAAAGATATGTGCTATAGAGCTGTTAAGTGCAAAGCGTGTACAATCATTTAGGTCCATAAGAGAAGAAGAGTGTTCAGCATTAGTTAAATCAATATATGCAAGTGAAGCCTCTATTGTTAATCTCACAGAGAAGATTTTGTCGATTACTTGTGGGATAATAATGCGGGCTGCTTTTGGGAAAAAGAGTAGACACCAACAAGTGTTCAAATCAACAATAGATCAGGCAATAAACCTAATGGCAGAATTTTGTATTGCTGATTTGTATCCTTCGTTTAAATTTCTTCAAAGGGTGAGTACGACCAGGCCCAAAATGGTAAAACTTCGAAGAGAGCTTGATATAATATTGCAAGACATCATCAATGATCACAAAAGCGTTCATCGAGACGCAAACAAGGATGAAGATCTAGTTGATGTTCTTCTCAAGATTCAACAGGAAAGTGATCACAAACAACATCGCTTGACTGATGAGAGCATTAAATCCGTCATCCTGGATATGTTTGCTGCTGGTAGCGAATCATCGTCAGGGATGGTTTTATGGGGGATGTCTGAGATGGTAAAGAATCCAAAGGTAATGGAAGAAGCACAAGCTGAAGTAAGAAGAGTGTTTGATAAAAAAGGGTATGTAGATGAAACAGATTTGCACCTGTTGGTATACTTAAAGTGTGTCATCAAAGAAACAATGAGGCTGCATCCTACATTACCATTGTTGATTCCAAGAGAAAATAGGGAGAAATGTAAAATCAATGAGTATGATATTCCAGCTAAGGCAAGGGTTGTTGTTAACGTTTGGGCAATTGGAAGAGATCCAAAGTATTGGGCTGAAGCCGAGAGTTTCAAACCGGAGAGATTTCATAATAGCTCAATTGATTTCAAAGGCACAAACTTTGAATACTTACCATTTGGTGCTGGAAGGAGAATGTGTCCAGGTATTGCTTTTGGCATACGGAACGTCGAGTTGCCTCTTGCTCAGTTACTTTACCATTTTGATTGGAAGCTTCCCAATGGAGTGAAGAATGAACAACTTGATATGACTGAGTCATTTGGAGGAATTACAGCAGGAAGAAAAAATGACTTATGCTTGATACCTATTACTCGTCGTCTTTGA 1512 0.3757 MDFLNYFSKITYMYSFLFFLALLKIVKTWSCKKSIVNLPPGPSTLPIIGNIHQVFSSSTPQHCCKNLAKKYGPLMHLKLGQVAHIIVSSPEMAKEIMKTQDLVFSDRPNLMLFRIFSYDTRDIAFSAYGEYWKQLRKICAIELLSAKRVQSFRSIREEECSALVKSIYASEASIVNLTEKILSITCGIIMRAAFGKKSRHQQVFKSTIDQAINLMAEFCIADLYPSFKFLQRVSTTRPKMVKLRRELDIILQDIINDHKSVHRDANKDEDLVDVLLKIQQESDHKQHRLTDESIKSVILDMFAAGSESSSGMVLWGMSEMVKNPKVMEEAQAEVRRVFDKKGYVDETDLHLLVYLKCVIKETMRLHPTLPLLIPRENREKCKINEYDIPAKARVVVNVWAIGRDPKYWAEAESFKPERFHNSSIDFKGTNFEYLPFGAGRRMCPGIAFGIRNVELPLAQLLYHFDWKLPNGVKNEQLDMTESFGGITAGRKNDLCLIPITRRL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03460 503 FunFam Cytochrome P450 71D8 31 498 - -
Vifa1g03460 503 Gene3D Cytochrome P450 31 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 Pfam Cytochrome P450 39 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 SUPERFAMILY Cytochrome P450 39 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Vifa1g03460 503 PANTHER OS08G0105600 PROTEIN 62 500 - -
Vifa1g03460 503 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 PRINTS E-class P450 group I signature 184 202 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03460 503 CDD CYP71-like 70 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03460 Vifa-Chr1 538950932 538952627 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03460 13 499 Cytochrome P450 AT1G13110 40.476 1.42e-130 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03460 - K23806 mtr:11442302 705.671