Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03459 ATGGAGCTTCACAACAATTTTTCTAACTTTACCTTACTGGCATCCTTTCTCTTCCCCTTGGTACTATTCAAAATAGTTACAAGATGGAGTAGTTCTAAAAATTCTAACGCCAATTTACCACCAGGGCCATGGGCCCTTCCCTTCATTGGGAACATACATCAGATTATTAGCAGTCCATTGCCTCATCATTCCTTCAAAACATTGGCACAAAAGCCAGACCTTATGTTGTCCACAATATTTAGTTACAATGCTACTGATATTATATTCTCCATACATGGAGAACACTGGAGGCAACTACGAAAAATATGTGTTATAGAGCTATTGAGTGTAAAGCGTGTCCAGTCATTTAAGTCCATAAGAGAACAAGAGGTGGCAGATCTTGTTAAATCAATAGCTGCAAGTGAAGGATCAATTGTTAATGTTTCTCAAAAGATTTCCGATATGACGCATGGGATAGTGGCGAGGGCAGCTTTTGGAAAAAGGAATAAACACGAACAAGTATTCAAATTAGCACTTGATGAAATAATAAGTTTGTGGGGAGGATTTTGTATTGCTGATTTGTATCCATCTATTAAATCACTTCAAAGGATGAGTATGGCAAAGAAAAAATTTGAAAAACTTCATAGAGAGATTGACATGATAATGCAAGATATCGTCGACGATCACAAAAGCATTCACAGGAGAGTAAGCAAGGATGAAGATATAGTTGATGCTCTTCTCAAGATTCAACAGGAAAATGAACACACACAACATCGCGTGACTGACGTAAATATGAAATCAATCATCCTGGACATGTTCGCTGCAGGTACTGAAACATCTGCAGGTGTTGGGGCATGGTGTATGTCTGAGATAGTAAAGAATCCAAAGGTAATGGAAGAAGCTCAAGCTGAAGTAAGAAGAGTGTTTGATAAAAAAGGGTATGTAGATGAGACAGAGATACATGAACTGACATACTTAAACTCTGTCATCAAAGAAACACTAAGGCTGCATCCTATTGTACCAATGTTACTTCCAAGAGAAAGTAGGGAGAGATGCCAAATAAATGGGTATGAGATCCCAGCTAAGACAAGGGTGATGGTCAATGCTTGGGCTATTGGAAGAGATCCAAAGTATTGGGTTGAAGCTGAGAGTTTTAAACCCGAGAGGTTTCTTAATAGTCCAATTGATTTCAAAGGCACAAACTTTGAGTTCATACCATTTGGTGCTGGAAGGAGAATGTGTCCAGGACTTGCATTTGCCTTACCGAGTATTGAGCTATCTCTTGCTCAATTACTTTACAACTTTAATTGGAAGCTTCCCTGTGATATGAAGAATGAAGAACTAGATATGACTGAGGCATTTGGGATCACAGCCAAAAGAAAACATGACCTTTGCTTGATTCCTATTATTCGTCGTCTTTGA 1401 0.3854 MELHNNFSNFTLLASFLFPLVLFKIVTRWSSSKNSNANLPPGPWALPFIGNIHQIISSPLPHHSFKTLAQKPDLMLSTIFSYNATDIIFSIHGEHWRQLRKICVIELLSVKRVQSFKSIREQEVADLVKSIAASEGSIVNVSQKISDMTHGIVARAAFGKRNKHEQVFKLALDEIISLWGGFCIADLYPSIKSLQRMSMAKKKFEKLHREIDMIMQDIVDDHKSIHRRVSKDEDIVDALLKIQQENEHTQHRVTDVNMKSIILDMFAAGTETSAGVGAWCMSEIVKNPKVMEEAQAEVRRVFDKKGYVDETEIHELTYLNSVIKETLRLHPIVPMLLPRESRERCQINGYEIPAKTRVMVNAWAIGRDPKYWVEAESFKPERFLNSPIDFKGTNFEFIPFGAGRRMCPGLAFALPSIELSLAQLLYNFNWKLPCDMKNEELDMTEAFGITAKRKHDLCLIPIIRRL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03459 466 PRINTS E-class P450 group I signature 397 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03459 466 PRINTS E-class P450 group I signature 361 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03459 466 PRINTS E-class P450 group I signature 320 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03459 466 PRINTS E-class P450 group I signature 148 166 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03459 466 PRINTS E-class P450 group I signature 257 274 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03459 466 PRINTS E-class P450 group I signature 277 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03459 466 PRINTS E-class P450 group I signature 407 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03459 466 FunFam Cytochrome P450 99A2 66 462 - -
Vifa1g03459 466 CDD CYP71-like 55 457 - -
Vifa1g03459 466 Gene3D Cytochrome P450 32 461 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03459 466 SUPERFAMILY Cytochrome P450 40 464 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03459 466 PRINTS P450 superfamily signature 321 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03459 466 PRINTS P450 superfamily signature 398 407 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03459 466 PRINTS P450 superfamily signature 407 418 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03459 466 PRINTS P450 superfamily signature 268 285 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03459 466 PANTHER OS08G0105600 PROTEIN 59 462 - -
Vifa1g03459 466 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 400 409 IPR017972 GO:0005506|GO:0016705
Vifa1g03459 466 Pfam Cytochrome P450 83 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03459 Vifa-Chr1 538713945 538715529 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03459 20 463 Cytochrome P450 AT5G25120 36.885 6.38e-109 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03459 - - mtr:11442302 692.96