Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03456 ATGGAGATTCACAACTTTTCTAACTTTACCTTACTGGTATCCTTTCTTTTTCTCTTGCTACTATTCAAAATAGTTAAAAGATGGAGTACTTCCCAAATTTCCAACCTCAATTTACCACCAGGACCATGGACACTGCCCTTCATAGGGAACATACATCAGATTATTAGCAGCCCGTTGCCTCATCATTCCTTCAAAACTTTGGCACAAAAGTATGGTCCTTTGATGTACCTAAAACTTGGTGAGGTGCCATACTTAATAGCTAGTTCACCAGAAATGGCCAAAGAGATTATGAAAACACAAGACCTCAACTTTTGTGATAGGCCAAACCTTATGTTGTCGACTATATTTGGTTATAATAATACTGATATTATATTCTCTATATATGGAGAACACTGGAGGCAACTACGAAAGATATGCGTTATAGAGCTATTGAGTGTAAAGCGTGTCCAGTCATTTAGGTCTATAAGAGAACAAGAGGTGGAAGACCTTGTTAAATCAATAACTGCAAGTGAAGGATCAATTGTTAATCTTTCTCGTAAGGTTTCCGATATGACATATGGGATAGTGGCGAGGGCGGCTTTTGGGAAAAGGAGTAAAAACGAACAAGCATTCAAATCAGCAACTGATGAAATAGCAGGTTTGTTGGGGGGGTTTTGTATTGCTGATTTATACCCATCTATTAAAATGCTTCAAAGGATGAGTATGGCCAAGACAAAATTGGAAAAACTTCACAGAGACATTGATAAGATAATGCAAGATATTCTCGAGGATCACAGGAGCATTCACAGGGGAGTATGGAAGGATGAAAATATAATGGATGCTCTTCTCAAGATTCAACAAGAAAATGAACAATCACAACATCCTGTGACTGACTTAAATATAAAATCAATCATTATGGACTTGTTTGCTGCTGGTACTCATACAACATCAGGAGTTATCTCATGGTGTATGTCTGAGATGGTAAAGAATCCAAAGGTAATGGAAGAAGCACAAGCTGAGGTAAGAAGAGTGTTTGATAAAAAAGGGTATGTAGATGAGAGAGAGATACATAAACTGATATACTTAAACTCTGTCATCAAAGAAACACTCAGGCTACATCCCATTGCACCAATGTTAGTTCCAAGAGAAAGTAGGGAGAGATGCCAAATAAATGGGTATGAGATCCCAGCAAAGACAAGGGTATTGGTCAATGCTTGGGCTATTGGAAGAGATCCAAAGTATTGGGTTGAAGCTGATAATTTTAAACCTGAGAGGTTTCTTAATAACCCAATTGATTTTAAAGGCATTGACTTTGAATTCATACCATTTGGTGCTGGAAGGAGGATTTGTCCAGGACTTGCATTTGCCTTACCGAGTATTGAGCTAACTATTGCTCAGTTACTTTACAACTTTAATTGGAAGCTTCCAAATGATATGAAGAATGAAGAACTAGATATGACTGAGACATTTGGGATTACAGCAAGTAGAAAACATGACTTATGCTTGATTCCTATTATTCGCCGTCTTTGA 1509 0.3757 MEIHNFSNFTLLVSFLFLLLLFKIVKRWSTSQISNLNLPPGPWTLPFIGNIHQIISSPLPHHSFKTLAQKYGPLMYLKLGEVPYLIASSPEMAKEIMKTQDLNFCDRPNLMLSTIFGYNNTDIIFSIYGEHWRQLRKICVIELLSVKRVQSFRSIREQEVEDLVKSITASEGSIVNLSRKVSDMTYGIVARAAFGKRSKNEQAFKSATDEIAGLLGGFCIADLYPSIKMLQRMSMAKTKLEKLHRDIDKIMQDILEDHRSIHRGVWKDENIMDALLKIQQENEQSQHPVTDLNIKSIIMDLFAAGTHTTSGVISWCMSEMVKNPKVMEEAQAEVRRVFDKKGYVDEREIHKLIYLNSVIKETLRLHPIAPMLVPRESRERCQINGYEIPAKTRVLVNAWAIGRDPKYWVEADNFKPERFLNNPIDFKGIDFEFIPFGAGRRICPGLAFALPSIELTIAQLLYNFNWKLPNDMKNEELDMTETFGITASRKHDLCLIPIIRRL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03456 502 FunFam Cytochrome P450 71D8 31 497 - -
Vifa1g03456 502 SUPERFAMILY Cytochrome P450 39 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 PANTHER CYTOCHROME P450 71B11-RELATED 20 498 - -
Vifa1g03456 502 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Vifa1g03456 502 CDD CYP71-like 70 493 - -
Vifa1g03456 502 Gene3D Cytochrome P450 31 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 PRINTS P450 superfamily signature 443 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 Pfam Cytochrome P450 39 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 Coils Coil 233 253 - -
Vifa1g03456 502 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 PRINTS E-class P450 group I signature 184 202 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03456 502 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03456 Vifa-Chr1 537978355 537979943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03456 7 501 Cytochrome P450 AT5G25140 40.438 1.48e-130 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03456 - - mtr:11442302 754.207