Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03431 ATGGTTGGGTTCCAGAGCGAGAATATGCCCGGGAACAACAAGTATAATGAATATAATAACTCTGGTGCTTCCTCTGTTGAACGATTCGTCGAAGGTGCTGCAGCAGCAGCAAAGGCTCTTAGTAATGGATATAAAAGGGAAGATGGAAAGCCTTTTAGACAACGGCTTTTGGTTGTGGCGAATAGACTGCCAGTTTCTGCTGTTAGGAAAGGTGAGGATTCTTGGTCATTAGAGATCAGTGCTGGCGGCTTGGTGAGTGCTCTTTTAGGTGTGAAGGAGTTTGAAGCGAGGTGGATAGGTTGGGCCGGGGTCAATGTGCCAGACGAGGTTGGACAGAAGACACTCACTGAAGCATTGGCTGAAAAGAGGTGTATCCCTGTATTTCTTACTGAAGAGATTGTTCATCAGTACTATAATGGCTATTGCAATAACATTTTGTGGCCCCTCTTTCATTATCTTGGACTTCCGCAAGAAGACCGTCTAGCAACAACTCGTGGTTTTCAATCTCAGTTTGAATCGTACCAAGTAGCAAACCAAATGTTTGCTGATGTTGTAAATGAGGTCTATGAAGAGGGAGATATTGTTTGGTGCCATGATTACCATCTTATGTTTCTACCACAATGCTTAAAGAAATTTAACAACAAAATGAAAGTTGGCTGGTTTCTCCATACCCCCTTTCCATCTTCTGAAATTCATAGGACTCTGCCATCTCGCACAGAGCTCCTCCGTGCAGTTCTTGCTGCTGACTTGGTTGGTTTTCACACCTATGATTATGCACGACACTTTGTTAGTGCATGTACTCGCATTCTCGGACTTGAGGCCACACCAGAAGGGGTTGAGGATCAAGGGAAAATGACTCGAGTTGCTGCATTTCCAATTGGTATAGACTCAGAACGATTTATACGGGCACTTGGCTCTTCTGAAGTTCAAGGTCCCATCAAAGACTTACAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATTCCTCAAAAACTTCTAGCTTTTGAAAAGTTCTTGGAAGAGAATGTTGATTGGCGAGATAAAGTTGTTCTGCTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCCGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATTGTTGGACGCATCAATGGCAGATTTGGATCACTGACTGCTGTTCCTATACATCACCTGGATCGCACTCTTGACTTTTATGGACTATGTGCTTTGTATGCAGTTACAGATGTAGCACTTGTCACGTCTTTGAGGGATGGAATGAATCTTGTCAGTTATGAGTTTGTGGCCTGCCAAGAAAAAAAGAAGGGGGTTCTCATTCTTAGTGAATTCGCTGGTGCTGCTCAATCTCTTGGTGCTGGGGCACTTCTGGTCAACCCCTGGAACATCACAAAAGTTGCTGAAGCAATTTCCAAAGCTCTGAACATGCCATCTGCAGAGAGAGAGAAGCGACACAGGCATAACTTTCATCATGTAACAACACACACTGCACAGGAGTGGGCAGAAACTTTTGTAAGTGAGCTTAATGATACTGTTGTTGAAGCACAACTGAGGACAAAGCAAGTTCCACCACGGCTCCCAGCTGACAAGGCAATTGAACAATATCTGACGTCAACCAATCGGCTACTTATTTTGGGATTCAATGGAACATTAACTGAACCAGTTGAGAGAAAAGGTGATCAGTTGAAAGAAATGGAACTCTCAGTGCATCCAGAACTGAAACTACCATTGACGAAACTTTGCAGTGACCCAAATACTACAGTTGTCGTGCTTAGTGGAAGTGATAGACAAATTCTAGATGAAAACTTTAAAGAATACGACACTTGGCTAGCAGCGGAGAATGGAATGTTTTTGAACTCTTCAAATGGAGAATGGATGACCACAATGCCAGAGCAACTGAATATGGAATGGGTTGACAGCGTGAAGCATATTTTTGAGTACTTCACTGAAAGAACACCTCGCTCACATTTTGAAGAAAGGGAAGCTTCACTTGTATGGAACTACAGACATGCAGATGTTGAGTTTGGAAAACTTCAAGCAAGGGACATGCTACAACATCTTTGCACAGGTCCAATTTCAAATGCATCAGTTGAAGTCGTTCAAGGGAGCCGATCAGTTGAGGTCCGAGCTGCTGGTGTTACAAAGGGAGCAGCTATTGACCGCATCCTGGGGGAGATAGTTCACTGTAAATCCATGACAACACCTATTGATTATGTTCTCTGTATAGGACATTTTCTGGCGAAGGATGAAGATATATACGACTTTTTTGAGCCAGAGCCTTCCTGTTTTGGTGCGAGTCTTCAAAGAAGCAAGTTAACAGAAGCAGCTAAGTTTGCTAATGAGAAGGTATCACCTATGAAGATCCCATCGGGTAAAAATGGATTCAAGTCAACAAATCAAAACAAGGGACAACGACCTGTCTCAAATTCACCGAAGAAAACATCTAATATTTTCAGCCGAACAGTGCGGAAGCCAGCTCCCGAAAAGATCACTTGGAATGTCCTTGACCTCAAGAAGGAGAATTACTTCTCATGCGCTGTTGGTAGAACTCAAACAAATGCTCGCTTTACACTTCCGTCACCTGATGAAGTTGCTGAGTTTCTGAAGGAACTTGCTAATGCATCTTCTCATAATAACTGA 2673 0.4287 MVGFQSENMPGNNKYNEYNNSGASSVERFVEGAAAAAKALSNGYKREDGKPFRQRLLVVANRLPVSAVRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEVGQKTLTEALAEKRCIPVFLTEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRGFQSQFESYQVANQMFADVVNEVYEEGDIVWCHDYHLMFLPQCLKKFNNKMKVGWFLHTPFPSSEIHRTLPSRTELLRAVLAADLVGFHTYDYARHFVSACTRILGLEATPEGVEDQGKMTRVAAFPIGIDSERFIRALGSSEVQGPIKDLQERFKGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENVDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTAVPIHHLDRTLDFYGLCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGALLVNPWNITKVAEAISKALNMPSAEREKRHRHNFHHVTTHTAQEWAETFVSELNDTVVEAQLRTKQVPPRLPADKAIEQYLTSTNRLLILGFNGTLTEPVERKGDQLKEMELSVHPELKLPLTKLCSDPNTTVVVLSGSDRQILDENFKEYDTWLAAENGMFLNSSNGEWMTTMPEQLNMEWVDSVKHIFEYFTERTPRSHFEEREASLVWNYRHADVEFGKLQARDMLQHLCTGPISNASVEVVQGSRSVEVRAAGVTKGAAIDRILGEIVHCKSMTTPIDYVLCIGHFLAKDEDIYDFFEPEPSCFGASLQRSKLTEAAKFANEKVSPMKIPSGKNGFKSTNQNKGQRPVSNSPKKTSNIFSRTVRKPAPEKITWNVLDLKKENYFSCAVGRTQTNARFTLPSPDEVAEFLKELANASSHNN 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03431 890 CDD GT20_TPS 55 520 IPR001830 GO:0003824|GO:0005992
Vifa1g03431 890 Gene3D - 642 722 - -
Vifa1g03431 890 Pfam Glycosyltransferase family 20 55 520 IPR001830 GO:0003824|GO:0005992
Vifa1g03431 890 Pfam Trehalose-phosphatase 558 773 IPR003337 GO:0003824|GO:0005992
Vifa1g03431 890 NCBIfam trehalose-phosphatase 551 882 IPR003337 GO:0003824|GO:0005992
Vifa1g03431 890 Gene3D - 555 736 IPR023214 -
Vifa1g03431 890 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 642 722 - -
Vifa1g03431 890 CDD HAD_TPP 553 770 - -
Vifa1g03431 890 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 302 504 - -
Vifa1g03431 890 SUPERFAMILY HAD-like 552 883 IPR036412 -
Vifa1g03431 890 Gene3D Glycogen Phosphorylase B; 302 504 - -
Vifa1g03431 890 Gene3D - 829 890 IPR023214 -
Vifa1g03431 890 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 55 520 IPR012766 GO:0003825|GO:0005992
Vifa1g03431 890 Gene3D Glycogen Phosphorylase B; 47 301 - -
Vifa1g03431 890 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 47 884 IPR001830 GO:0003824|GO:0005992
Vifa1g03431 890 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 54 523 - -
Vifa1g03431 890 MobiDBLite consensus disorder prediction 802 827 - -
Vifa1g03431 890 MobiDBLite consensus disorder prediction 799 827 - -
Vifa1g03431 890 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 47 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03431 Vifa-Chr1 535154007 535163815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03431 13 887 Trehalose Biosynthesis Gene Families AT1G78580 76.063 0.0 1387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03431 K16055 - gmx:100789554 1468.75