Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03430 ATGGTTGGGTTCCAGAGCGAGAATATGCCCGGGAACAACAAGTATAATGAATATAATAACTCTGGTGCTTCCTCTGTTGAACGATTCGTCGAAGGTGCTGCAGCAGCAGCAAAGGCTCTTAGTAATGGATATAAAAGGGAAGATGGAAAGCCTTTTAGACAACGGCTTTTGGTTGTGGCGAATAGACTGCCAGTTTCTGCTGTTAGGAAAGGTGAGGATTCTTGGTCATTAGAGATCAGTGCTGGCGGCTTGGTGAGTGCTCTTTTAGGTGTGAAGGAGTTTGAAGCGAGGTGGATAGGTTGGGCCGGGGTCAATGTGCCAGACGAGGTTGGACAGAAGACACTCACTGAAGCATTGGCTGAAAAGAGGTGTATCCCTGTATTTCTTACTGAAGAGATTGTTCATCAGTACTATAATGGCTATTGCAATAACATTTTGTGGCCCCTCTTTCATTATCTTGGACTTCCGCAAGAAGACCGTCTAGCAACAACTCGTGGTTTTCAATCTCAGTTTGAATCGTACCAAGTAGCAAACCAAATGTTTGCTGATGTTGTAAATGAGGTCTATGAAGAGGGAGATATTGTTTGGTGCCATGATTACCATCTTATGTTTCTACCACAATGCTTAAAGAAATTTAACAACAAAATGAAAGTTGGCTGGTTTCTCCATACCCCCTTTCCATCTTCTGAAATTCATAGGACTCTGCCATCTCGCACAGAGCTCCTCCGTGCAGTTCTTGCTGCTGACTTGGTTGGTTTTCACACCTATGATTATGCACGACACTTTGTTAGTGCATGTACTCGCATTCTCGGACTTGAGGCCACACCAGAAGGGGTTGAGGATCAAGGGAAAATGACTCGAGTTGCTGCATTTCCAATTGGTATAGACTCAGAACGATTTATACGGGCACTTGGCTCTTCTGAAGTTCAAGGTCCCATCAAAGACTTACAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATTCCTCAAAAACTTCTAGCTTTTGAAAAGTTCTTGGAAGAGAATGTTGATTGGCGAGATAAAGTTGTTCTGCTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCCGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATTGTTGGACGCATCAATGGCAGATTTGGATCACTGACTGCTGTTCCTATACATCACCTGGATCGCACTCTTGACTTTTATGGACTATGTGCTTTGTATGCAGTTACAGATGTAGCACTTGTCACGTCTTTGAGGGATGGAATGAATCTTGTCAGTTATGAGTTTGTGGCCTGCCAAGAAAAAAAGAAGGGGGTTCTCATTCTTAGTGAATTCGCTGGTGCTGCTCAATCTCTTGGTGCTGGGGCACTTCTGGTCAACCCCTGGAACATCACAAAAGTTGCTGAAGCAATTTCCAAAGCTCTGAACATGCCATCTGCAGAGAGAGAGAAGCGACACAGGCATAACTTTCATCATGTAACAACACACACTGCACAGGAGTGGGCAGAAACTTTTGTAAGTGAGCTTAATGATACTGTTGTTGAAGCACAACTGAGGACAAAGCAAGTTCCACCACGGCTCCCAGCTGACAAGGCAATTGAACAATATCTGACGTCAACCAATCGGCTACTTATTTTGGGATTCAATGGAACATTAACTGAACCAGTTGAGAGAAAAGGTGATCAGTTGAAAGAAATGGAACTCTCAGTGCATCCAGAACTGAAACTACCATTGACGAAACTTTGCAGTGACCCAAATACTACAGTTGTCGTGCTTAGTGGAAGTGATAGACAAATTCTAGATGAAAACTTTAAAGAATACGACACTTGGCTAGCAGCGGAGAATGGAATGTTTTTGAACTCTTCAAATGGAGAATGGATGACCACAATGCCAGAGCAACTGAATATGGAATGGGTTGACAGCGTGAAGCATATTTTTGAGTACTTCACTGAAAGAACACCTCGCTCACATTTTGAAGAAAGGGAAGCTTCACTTGTATGGAACTACAGACATGCAGATGTTGAGTTTGGAAAACTTCAAGCAAGGGACATGCTACAACATCTTTGCACAGGTCCAATTTCAAATGCATCAGTTGAAGTCGTTCAAGGGAGCCGATCAGTTGAGGTCCGAGCTGCTGGTGTTACAAAGGGAGCAGCTATTGACCGCATCCTGGGGGAGATAGTTCACTGTAAATCCATGACAACACCTATTGATTATGTTCTCTGTATAGGACATTTTCTGGCGAAGCAGGATGAAGATATATACGACTTTTTTGAGCCAGAGCCTTCCTGTTTTGGTGCGAGTCTTCAAAGAAGCAAGTTAACAGAAGCAGCTAAGTTTGCTAATGAGAAGGTATCACCTATGAAGATCCCATCGGGTAAAAATGGATTCAAGTCAACAAATCAAAACAAGGGACAACGACCTGTCTCAAATTCACCGAAGAAAACATCTAATATTTTCAGCCGAACAGTGCGGAAGCCAGCTCCCGAAAAGATCACTTGGAATGTCCTTGACCTCAAGAAGGAGAATTACTTCTCATGCGCTGTTGGTAGAACTCAAACAAATGCTCGCTTTACACTTCCGTCACCTGATGAAGTTGCTGAGTTTCTGAAGGAACTTGCTAATGCATCTTCTCATAATAACTGA 2676 0.429 MVGFQSENMPGNNKYNEYNNSGASSVERFVEGAAAAAKALSNGYKREDGKPFRQRLLVVANRLPVSAVRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEVGQKTLTEALAEKRCIPVFLTEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRGFQSQFESYQVANQMFADVVNEVYEEGDIVWCHDYHLMFLPQCLKKFNNKMKVGWFLHTPFPSSEIHRTLPSRTELLRAVLAADLVGFHTYDYARHFVSACTRILGLEATPEGVEDQGKMTRVAAFPIGIDSERFIRALGSSEVQGPIKDLQERFKGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENVDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTAVPIHHLDRTLDFYGLCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGALLVNPWNITKVAEAISKALNMPSAEREKRHRHNFHHVTTHTAQEWAETFVSELNDTVVEAQLRTKQVPPRLPADKAIEQYLTSTNRLLILGFNGTLTEPVERKGDQLKEMELSVHPELKLPLTKLCSDPNTTVVVLSGSDRQILDENFKEYDTWLAAENGMFLNSSNGEWMTTMPEQLNMEWVDSVKHIFEYFTERTPRSHFEEREASLVWNYRHADVEFGKLQARDMLQHLCTGPISNASVEVVQGSRSVEVRAAGVTKGAAIDRILGEIVHCKSMTTPIDYVLCIGHFLAKQDEDIYDFFEPEPSCFGASLQRSKLTEAAKFANEKVSPMKIPSGKNGFKSTNQNKGQRPVSNSPKKTSNIFSRTVRKPAPEKITWNVLDLKKENYFSCAVGRTQTNARFTLPSPDEVAEFLKELANASSHNN 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03430 891 NCBIfam trehalose-phosphatase 551 883 IPR003337 GO:0003824|GO:0005992
Vifa1g03430 891 CDD GT20_TPS 55 520 IPR001830 GO:0003824|GO:0005992
Vifa1g03430 891 MobiDBLite consensus disorder prediction 803 828 - -
Vifa1g03430 891 MobiDBLite consensus disorder prediction 800 828 - -
Vifa1g03430 891 Pfam Glycosyltransferase family 20 55 520 IPR001830 GO:0003824|GO:0005992
Vifa1g03430 891 Gene3D - 828 891 IPR023214 -
Vifa1g03430 891 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 642 722 - -
Vifa1g03430 891 Pfam Trehalose-phosphatase 558 774 IPR003337 GO:0003824|GO:0005992
Vifa1g03430 891 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 302 504 - -
Vifa1g03430 891 SUPERFAMILY HAD-like 552 884 IPR036412 -
Vifa1g03430 891 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 47 885 IPR001830 GO:0003824|GO:0005992
Vifa1g03430 891 Gene3D - 555 736 IPR023214 -
Vifa1g03430 891 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 55 520 IPR012766 GO:0003825|GO:0005992
Vifa1g03430 891 CDD HAD_TPP 553 771 - -
Vifa1g03430 891 Gene3D Glycogen Phosphorylase B; 302 504 - -
Vifa1g03430 891 Gene3D Glycogen Phosphorylase B; 47 301 - -
Vifa1g03430 891 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 54 523 - -
Vifa1g03430 891 Gene3D - 642 722 - -
Vifa1g03430 891 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 47 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03430 Vifa-Chr1 535154007 535163815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03430 13 888 Trehalose Biosynthesis Gene Families AT1G78580 75.978 0.0 1383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03430 K16055 - gmx:100789554 1464.13