Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03421 ATGAAGATTCAGTGTAACGTGTGTGAAGCTGCAGAAGCTAAGGTTATGTGTTGTGCTGATGAAGCGGCCTTGTGTTGGGATTGTGATGAGAAAGTTCATGCTGCTAATAAGCTTGCTAGCAAGCATCAAAGGATTCCTCTTTCCAGTTCTTCTTCTCATATGCCTAAATGTGATATTTGTCAGGAAGCATTCGGCTATTTCTTTTGTCTAGAGGACCGTGCTCTACTCTGTCGAAAATGTGATCTAGCAATACACACTGCAAATGCATTTGTCTCAGGACATCAAAGGTTTCTTCTCACCGGTGTAAAAGTAGGCCTAGAAGCCACTGATCCCGGCGCTTCCTCAAATTCATTGAAGTCAGATTCGGGCGAGAAAGCTTCTGGTACGAAATCTTCTTCTGTCTCCAGAAAGGTTTCCAAAATGCCTCAGTCATCAGAATACAATGAAATGTTTCCTACCCAAGGTGGAAGAGTTATGGAGTTTCCACCAGAGAAGGTTTCTTATGGTGGTGGCTCTACAGCAGGAAACATGTCACATTGGTCAATTGATGAATTTTTCGGCGTTAATGATTTCAGTCAGAGCTATAACTACATGGATGGATCATCAAGGGCCGACAGTGATAAGTTTGAGGATTCTGATTCTCCTGTTTTAAGATCCAACGATGAGGAAATGGAGTACGACGACTACATGGACCGCGTTCCAGATTCATGTTGGACAGTTCCTCAGGTCCCTTCACCTCCTACAGCTTCTGGGCTATACTGGCCGAAAAACCTTCGGTATTCATCGGATAATGCTCTATTTGTTCCTGACTTAAGCATGCAACAGTCTCAGAATAGTAGTAATTTTTCAAGATCGCGGAATCATCATTAA 870 0.4299 MKIQCNVCEAAEAKVMCCADEAALCWDCDEKVHAANKLASKHQRIPLSSSSSHMPKCDICQEAFGYFFCLEDRALLCRKCDLAIHTANAFVSGHQRFLLTGVKVGLEATDPGASSNSLKSDSGEKASGTKSSSVSRKVSKMPQSSEYNEMFPTQGGRVMEFPPEKVSYGGGSTAGNMSHWSIDEFFGVNDFSQSYNYMDGSSRADSDKFEDSDSPVLRSNDEEMEYDDYMDRVPDSCWTVPQVPSPPTASGLYWPKNLRYSSDNALFVPDLSMQQSQNSSNFSRSRNHH 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03421 289 SMART bboxneu5 52 99 IPR000315 GO:0008270
Vifa1g03421 289 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vifa1g03421 289 CDD Bbox1_BBX-like 5 47 - -
Vifa1g03421 289 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vifa1g03421 289 MobiDBLite consensus disorder prediction 203 223 - -
Vifa1g03421 289 MobiDBLite consensus disorder prediction 110 158 - -
Vifa1g03421 289 MobiDBLite consensus disorder prediction 110 151 - -
Vifa1g03421 289 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Vifa1g03421 289 MobiDBLite consensus disorder prediction 201 223 - -
Vifa1g03421 289 Gene3D Classic Zinc Finger 1 92 - -
Vifa1g03421 289 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 277 - -
Vifa1g03421 289 FunFam B-box zinc finger protein 22 1 93 - -
Vifa1g03421 289 CDD Bbox1_BBX-like 56 99 - -
Vifa1g03421 289 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03421 Vifa-Chr1 532980021 532981421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03421 1 272 C2C2-CO-like Transcription Factor Family AT1G78600 48.208 9.90e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vifa1g03421 zf-B_box 8.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03421 - - gmx:100790959 439.113