Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa1g03419 | ATGGATTTCGTTTTTGATTCTGTAGCTAATGCCATTGTATTGGCATTCTTTTCTATATTCATCATCTACTATTTGTTCCTAAATAAATCTTCCAAATTAGTTTCTCATAGTAAAGAGGCTCCTATTGTTCAAGGTGCATGGCCAATACTTGGCCACCTCCCACTATTAAAGGCGTCACAAGGACCCCATAGAGTCTTAGGTGCATTGGCTGACAAATATGGACCCTTAGTCAACATCAAGCTAGGTTCTAAACGTGTTTTAGTAATTAGCAATTGGGAAATGGCTAAGGAATGTTTCACCAAGATGGACTCGATAGTTTCAAATCGCCCTAAACTTGAATCAACTCAACATCTAGGTTACAATGGAGCCATGTTTTCGCTTTCACCCTATAATTCTTATTGGCGTCAAATAAGAAAGCTTGCAAACTCAGAGATCCTCAGCCATCACCGCGTTGAGCAACTACAACCTTTTCGGGTCAAGGTAGTTAGGGCTTCCATAAAAGAGCTCTACAATGTTTGGTATAGTAATGAGAGTAAGTCTTCAGAATATGTGTTGGTGGAGTTGAAGGAATGGTTTACTCAATTGAGTACAAACATTGTTCTTCCGAGTTTGATTGGGAAGAAACAATATTTTAATACTACGAATGGGATTGACAAGGAAGAAGAACAAAAATTTATGATAGCTATGAAAGAATTGTTACGTTTGTTAGGTGTGTTCACAGTAGGAGATGCTATTCCTTTTTTAAAGTGGTTTGATATTGGTGGCCATGTGAAGGCCATGAAAAAAGCTTCTAAAGAATTGGACAACATTTTAGGTGAATTGTTGGAGAAGCGCCGTAGGAACAAGAGTTCGAATGATAATGAGATTGATCGTGATAATCAAGATTTCATGGATGTGATGCTTTCATTGCTTGATGGAACAACAACAGAAGGATTTGAATCCGATACCATAATCAAAGCCACTACATTGGCACTGATTGCGGGAGCAGTTGACACAACTAGTGTCACTGTTATATGGGCAATATGTTTGTTAGTAAATAATCCTCTTGCATTGGAAAAGGTAAAAGAAGAACTTAACACTCAAGTTGGCAAAGAGAGATGTGTAAAAGAGTCCGATATAGACAAATTGGTCTACCTTCAAGCTATAGTCAAAGAAACACTAAGGTTATATCCAGTTGCTCCTCTCTCAGGACCACGCGAATTTTCAGAGAATTGTAATTTAAGTGGTTTTGATGTCAAAAAAGGAACACGATTAATAATTAATCTTTGGAAGATCCATACTGATCCTCAAGTTTGGTTAGATCCGTTAAAATTCAAACCTGAACGGTTTCTTACTACTCATAAAAATGTTGATGTTAAGGGTCATCATTTTGAATTAATACCATTCGGATGTGGTAGAAGGATTTGTCCTGGAATGTCATATGCCCATCAAATGGTGCATTTAACTTTAGCTAGTTTTTTGCATTCCTTTGAAATCTTAAAACTATCAAATGAGCCTATTGATATGACCGAATGTTTTGGAATAACCAATACCAAAGCAAATCCGCTTGAGATTCTCATTAAACCATGCTTGTCTTCAAATTGTTATGAAATTATGTGA | 1599 | 0.3677 | MDFVFDSVANAIVLAFFSIFIIYYLFLNKSSKLVSHSKEAPIVQGAWPILGHLPLLKASQGPHRVLGALADKYGPLVNIKLGSKRVLVISNWEMAKECFTKMDSIVSNRPKLESTQHLGYNGAMFSLSPYNSYWRQIRKLANSEILSHHRVEQLQPFRVKVVRASIKELYNVWYSNESKSSEYVLVELKEWFTQLSTNIVLPSLIGKKQYFNTTNGIDKEEEQKFMIAMKELLRLLGVFTVGDAIPFLKWFDIGGHVKAMKKASKELDNILGELLEKRRRNKSSNDNEIDRDNQDFMDVMLSLLDGTTTEGFESDTIIKATTLALIAGAVDTTSVTVIWAICLLVNNPLALEKVKEELNTQVGKERCVKESDIDKLVYLQAIVKETLRLYPVAPLSGPREFSENCNLSGFDVKKGTRLIINLWKIHTDPQVWLDPLKFKPERFLTTHKNVDVKGHHFELIPFGCGRRICPGMSYAHQMVHLTLASFLHSFEILKLSNEPIDMTECFGITNTKANPLEILIKPCLSSNCYEIM | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa1g03419 | 532 | Coils | Coil | 260 | 280 | - | - | |
| Vifa1g03419 | 532 | FunFam | Cytochrome P450 82C4 | 30 | 521 | - | - | |
| Vifa1g03419 | 532 | CDD | CYP82 | 74 | 523 | - | - | |
| Vifa1g03419 | 532 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 462 | 471 | IPR017972 | GO:0005506|GO:0016705 | |
| Vifa1g03419 | 532 | PRINTS | E-class P450 group I signature | 70 | 89 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | PRINTS | E-class P450 group I signature | 317 | 334 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | PRINTS | E-class P450 group I signature | 94 | 115 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | PRINTS | E-class P450 group I signature | 459 | 469 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | PRINTS | E-class P450 group I signature | 337 | 363 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | PRINTS | E-class P450 group I signature | 380 | 398 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | PRINTS | E-class P450 group I signature | 421 | 445 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | PRINTS | E-class P450 group I signature | 469 | 492 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | SUPERFAMILY | Cytochrome P450 | 46 | 522 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | Pfam | Cytochrome P450 | 45 | 505 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | Gene3D | Cytochrome P450 | 27 | 523 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | PRINTS | P450 superfamily signature | 381 | 392 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | PRINTS | P450 superfamily signature | 460 | 469 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | PRINTS | P450 superfamily signature | 469 | 480 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | PRINTS | P450 superfamily signature | 328 | 345 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vifa1g03419 | 532 | PANTHER | CYTOCHROME P450 82C3-RELATED | 17 | 529 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa1g03419 | Vifa-Chr1 | 532444873 | 532446610 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa1g03419 | 40 | 529 | Cytochrome P450 | AT4G31940 | 43.863 | 5.09e-155 | 451 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa1g03419 | - | - | gmx:100803451 | 659.833 |