Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03418 ATGTCATATGAATCCGACATGTTCAGCGTTGAACCGATTCAAAATCTAGACTCATATTGCTTTCTACCAAATGAGAATCTCGAAAACTACTGGTCCTCCGATAATTATAGCCATTCAACCTACCCTTCATTTCAAGCTGTAGAACAATATTCCTCCCTTGGATCTTCTAACAACAGTCCAGTCTCAAAACTACAGTCAAAATCTTCCGCGTTCACGTCGCAAGATTCTCTTGAAATTATCAACAATTCGTTAGAGAACGAATTGTGTTTGACACATAACCAAGATGACTTGTGGCACAAGATAAGAGAGCTCGAAAATGCTATGCTGGGAAACGATGCAGCCGACATATATAACCACACTGATATGATTCGAGAAGAATCGGATCCACTTATGTTAGAGGCAGAAAAGTGGAACAAAATGATGCAGATGATATCGAGAGGCAATTTGAAAGAAGCGCTTTTTACTTGTGCAAAAGCAGTATCGGAAAACGATATAGAAACAACTGAATGGTTAATGACAGAGTTGCCGAAAATGGTTTCGGTTTCGGGAAGTCCAATCCAAAGGTTAGGAGCATACATGTTGGAAGCTCTTGTTGCAAGAATCGCTTCTTCAGGAAGCATAATCTACAAATCCTTGAAATGTAAAGAACCTACCATTGCTACTAGTAATGAACTCCTCTCACACATGCATGTCCTTTATGAAATCTGTCCTTACCTCAAATTCGGATACATGTCGGCAAACGGAGTCATTGCCGAAGTGTTGAAGGATGAAAGTGAAGTTCATATAATTGATTTTCAGATTAACCAGGGAGTTCAGTGGATAAGTCTAATCCAAGCTCTTGCTGGAAAACCGGGAGGACCGCCGAAGATCAGAATAACCGGCTTCGATGATTCGACTTCAGCTTATGCAAGAGGAGGAGGACTTGATATCGTTGGACAAAGGTTGTCGAAACTCGCACAATCATATAATGTAGCATTTGAGTTCCATGCTATAAAGGTTAATCCTACTGAGGTGAAACTCGAAGACCTTGAACTCCGTCGCGGTGAAGCTATTGCGGTGAATTTCGCCATGACGCTACACCATGTACCGGACGAAAATGTACACGGAGGTCAGAATCATCGCAGCCGGTTGGTGAGATTGGTGAAGTGCTTGTCCCCTAAGGTAGTGACTCTTGTTGAACAAGAATCAAACACCAACGAGCTCCCATTCTTCGCACGTTTCGTCGAGACAATGAACTACTACTTAGCAGTTTTTGAGTCAATCGACGTTGCTTTGCCGAGGGAGCACAGAGAACGGATTAATGTGGAGCAACATTGTTTAGCTCGCGAAGTTGTCAATTTAATCGCGTGCGAAGGTGCGGAAAGGGTCGAACGTCACGATCCTTTGAAGAAGTGGAAATCGTGTTTCACAATGGCTGGATTCACACCATATCCATTGAGTCCCTACATTAATGGTTCCATAAAGAATCTTCTTGAAAGTTATCAAGGACATTACACTCTAGAAGAGAATGATGGTGCTCTCTATCTAGGTTGGATGAATCAGGCTCTTATTACCTCTAGTGCTTGGAGGTGA 1572 0.4237 MSYESDMFSVEPIQNLDSYCFLPNENLENYWSSDNYSHSTYPSFQAVEQYSSLGSSNNSPVSKLQSKSSAFTSQDSLEIINNSLENELCLTHNQDDLWHKIRELENAMLGNDAADIYNHTDMIREESDPLMLEAEKWNKMMQMISRGNLKEALFTCAKAVSENDIETTEWLMTELPKMVSVSGSPIQRLGAYMLEALVARIASSGSIIYKSLKCKEPTIATSNELLSHMHVLYEICPYLKFGYMSANGVIAEVLKDESEVHIIDFQINQGVQWISLIQALAGKPGGPPKIRITGFDDSTSAYARGGGLDIVGQRLSKLAQSYNVAFEFHAIKVNPTEVKLEDLELRRGEAIAVNFAMTLHHVPDENVHGGQNHRSRLVRLVKCLSPKVVTLVEQESNTNELPFFARFVETMNYYLAVFESIDVALPREHRERINVEQHCLAREVVNLIACEGAERVERHDPLKKWKSCFTMAGFTPYPLSPYINGSIKNLLESYQGHYTLEENDGALYLGWMNQALITSSAWR 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03418 523 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 114 517 IPR005202 -
Vifa1g03418 523 Pfam GRAS domain family 149 523 IPR005202 -
Vifa1g03418 523 ProSiteProfiles GRAS family profile. 140 523 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03418 Vifa-Chr1 531641444 531643015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03418 13 523 GRAS Transcription Factor Family AT1G50600 57.422 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g03418 GRAS 5.3e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03418 - - cam:101502619 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03418 1 531641444 531643015 Vifa1g03418 1 531641444 531643015 ECH
Vifa1g09812 1 1596682791 1596684431 Vifa1g03418 1 531641444 531643015 PCT