Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03416 ATGAATGTTACAATAACCACAATGCTCTCCCTCATATTAATATACATTACTATGAACTTTTTTTCAATCCAAATTAGAAAATCCAAAAACTATATTCTCCCACCAGGTCCATCACCATTTGCAATCATGTCACATGTTTTTGAGCTAAGAAAAAATCCACAATACTGTCTAGCCAAATTTTCCACCATGCATGGTCCAATAATGCACTTAAAGCTAGGGCAAATATCGACCGTCGTAATTTCATCGGCCGATGCAGCACAAGAAGTGCTTCAAACTCATGATCTTTTATTCTCAAACCGAACGGTTCCTCAAGCTGTCGCGGTCCTCGATCACGAGATTTTTAGTTTACCATTTATGCCGGTTTGTGATCTTTGGAGAGACCTAAGAAAAATATGCAAAAATGAGTTGTTTTCTAGCCAAACACTTGATGCTAGCCATGCACTTAGGTGTAAGAAGTTACAAGAGATTTTAAGTGAGATTGATACAAGTAGCTTACTTGGTGAAGCTGTTGATATTGGAAGAGCTGGTTTTAAGACTACAATGAATTTTTTATCAAACACTTTTTTTTCAAAGGATTTTGCTAACTCTGCAGGTGAAACTGATGAGTATAAGAGTATTATTGAAAATCTTGTGAGTGCAATAGGAACACCCAATTTGGTTGATTTTTTTCCGGTTTTGAAAATGGTTGATCCACAAGGTATTAGAGGAGTTTCAGCAACTTATCTTGATAAGTTGTTGCAAATTATTGATTCTTATATCATCAAAAGATTGGAGTTAAGAGGAGGAGAAAATTATGTCAAATATGATGATATGTTGGATAATTTGCTAGATATCTCTCAACAGAATGACCAAAAGATGGATAACACTAAGATAAAACATTTGTTTCTTGATTTATTTGTTGCGGGAACTGATACAACTTCCTATACAATAGAGAAAGCAATGACAGAATTAATTCACAATTCACACGCGATGTTAAAGGTTAAAAAAGAGCTTGAGCAAATAATCGGCATAGGAAAAACTGTACAAGAATCTGACATTGTCAAACTTCCATATTTGCAAGCAATAGTAAAAGAAACATTACGCCTGCATCCATCAGCTCCGCTTTTATTACCAAGGAAAGCTAAGATTGATGTTCAAATTCAAGGTTATACAATTCCACAAGGCGCACAAGTCCTAATTAACAAATGGGCCATGGCGAGAGACCCAAAAATTTGGGCTGATGCAAACTCGTTTTCACCTGAAAGATTTTTGGGCTCTGAAATAAATTACAGAGGCCAAAACTTTCAGTTGACACCATTTGGAAGTGGAAGAAGAATATGTCCTGGCATGCCACTTGCTATTAGAATGTTGCACACAATGTTGGGATCATTGATTAACTTTTTTGATTGGAAACTTGAAAATGGAGTTATGGATATTGATCAACACTTGAGAGCTATTCCCTCTAGAGTAAACAAGGTGGAACATACAAAATGA 1473 0.3571 MNVTITTMLSLILIYITMNFFSIQIRKSKNYILPPGPSPFAIMSHVFELRKNPQYCLAKFSTMHGPIMHLKLGQISTVVISSADAAQEVLQTHDLLFSNRTVPQAVAVLDHEIFSLPFMPVCDLWRDLRKICKNELFSSQTLDASHALRCKKLQEILSEIDTSSLLGEAVDIGRAGFKTTMNFLSNTFFSKDFANSAGETDEYKSIIENLVSAIGTPNLVDFFPVLKMVDPQGIRGVSATYLDKLLQIIDSYIIKRLELRGGENYVKYDDMLDNLLDISQQNDQKMDNTKIKHLFLDLFVAGTDTTSYTIEKAMTELIHNSHAMLKVKKELEQIIGIGKTVQESDIVKLPYLQAIVKETLRLHPSAPLLLPRKAKIDVQIQGYTIPQGAQVLINKWAMARDPKIWADANSFSPERFLGSEINYRGQNFQLTPFGSGRRICPGMPLAIRMLHTMLGSLINFFDWKLENGVMDIDQHLRAIPSRVNKVEHTK 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03416 490 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 433 442 IPR017972 GO:0005506|GO:0016705
Vifa1g03416 490 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 PRINTS E-class P450 group I signature 430 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 PRINTS E-class P450 group I signature 85 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 PRINTS E-class P450 group I signature 440 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 Gene3D Cytochrome P450 24 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 Pfam Cytochrome P450 34 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 CDD CYP76-like 64 480 - -
Vifa1g03416 490 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 PRINTS P450 superfamily signature 440 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 FunFam Cytochrome P450 76C4 25 487 - -
Vifa1g03416 490 SUPERFAMILY Cytochrome P450 34 472 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g03416 490 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 8 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03416 Vifa-Chr1 531391217 531393396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03416 1 484 Cytochrome P450 AT2G45550 40.161 1.62e-137 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03416 - - gmx:100792017 602.053