Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03415 ATGTATCATAGTGAACTATACTATCTTTATCAGGTGGAACCATCACCAACTACTGGATCCTTTCTTCAAGCTTTACATTGTCCTATGGCTTCTACTGGTTCTGCTACGTTTTCTGTAACCTCTGCATGCTTCAATAACAGCGCTGTTAATGGCAGAAAATCAAGTTTCTTTGAGTTTAAACCACATGATAGAAATATGGTTCCTGCAGACTTCAACAAGGATGCGCGTGAACAATCTACTCAAGTAGAAGTTCCGGCACTTGTGCTCCCGTTGATGTCAATTCGAATGAACTTAACCTCAAAGGCAACGGAGCTAATGGACTTCAATCCTCGAACGATGGGTACAATTGGCGAAAGTATGGACAAAAACATGTTAAAGGGAGTGAATTTCCGCGTAGCTATTACAAATGGAACACATGATCATCCTAAACCTCAACCAAACAACCGATACTCTGCTGGTTCTGTTATGTCTACGCAAGGAGAGAGGTCCGATAATAGGGTAGACAAAGCATCCAATAGTCCAGAGCAATCGCCTGTGACAACAATTGATCTTAGTCCAGACGGTGCTGGATTTGCGTCGACTAGGACAAATGACGAGGTTGATGATGATGATCCCTTCTCCAAGCGAAGAAAAATGGAACTTGGAAATGCTGAAATCATTCCTATTGTTAAGCCGATCCGAGAGCCGCGAGTTGTTGTACAGACTATGAGCGAAGTTGATATATTGGATGATGGATACCGCTGGCGTAAATATGGACAGAAGGTGGTGAGAGGAAATCCTAACCCAAGGAGTTATTACAAATGCACAAACACGGGTTGCCCCGTGAGAAAACACGTGGAGAGGGCATCACATGATCCGAAAGCTGTAATAACAACATACGAAGTTTCAATTGAAGCGACAAGGATAAAGTTGGAAGAAAGTGATACTATTAGTCTTAACCTTGGAATGGGAATCAACTCAGCAACTGAAAACAGATCGAACGGCCGAAGGCAAATGCTGCTTTCTGAACTCGGCAATAGCAGTCAAATTCACACAAGCAATTCCAATTTCAAGTTTATTCATACTACATCGGTTCCGGTATACTATGGTGTTCTAAATAACAGTTCAAATCCATTTGGTTCTAGCGAAAATAGGAATGATGGTTCATCTTTGAACCGTTCTGCGTATCCTTGCACGCAGAATATGGGAAGAATACTAATGGGGCCATGA 1209 0.4218 MYHSELYYLYQVEPSPTTGSFLQALHCPMASTGSATFSVTSACFNNSAVNGRKSSFFEFKPHDRNMVPADFNKDAREQSTQVEVPALVLPLMSIRMNLTSKATELMDFNPRTMGTIGESMDKNMLKGVNFRVAITNGTHDHPKPQPNNRYSAGSVMSTQGERSDNRVDKASNSPEQSPVTTIDLSPDGAGFASTRTNDEVDDDDPFSKRRKMELGNAEIIPIVKPIREPRVVVQTMSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEVSIEATRIKLEESDTISLNLGMGINSATENRSNGRRQMLLSELGNSSQIHTSNSNFKFIHTTSVPVYYGVLNNSSNPFGSSENRNDGSSLNRSAYPCTQNMGRILMGP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03415 402 SUPERFAMILY WRKY DNA-binding domain 234 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g03415 402 Gene3D WRKY domain 229 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g03415 402 ProSiteProfiles WRKY domain profile. 237 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03415 402 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 133 294 IPR044810 GO:0003700
Vifa1g03415 402 SMART WRKY_cls 242 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03415 402 MobiDBLite consensus disorder prediction 135 207 - -
Vifa1g03415 402 MobiDBLite consensus disorder prediction 140 161 - -
Vifa1g03415 402 FunFam WRKY transcription factor 33 229 295 - -
Vifa1g03415 402 Pfam WRKY DNA -binding domain 243 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03415 Vifa-Chr1 531284963 531286883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03415 134 402 WRKY Transcription Factor Family AT4G26640 52.941 6.82e-92 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g03415 WRKY 2.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03415 - - gmx:100816583 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03415 1 531284963 531286883 Vifa1g03415 1 531284963 531286883 ECH
Vifa1g03415 1 531284963 531286883 Vifa1g03415 1 531284963 531286883 PCT