Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03413 ATGCCGAGTGTGAACCCCGATTCATCTGACAAAGACTCCGAGGTATTCGCAGAAACTGATCCAACTGGTCGATACGGTAGATACACTGAGCTATTAGGCTGCGGTGCGGTGAAGAAAGTGTACCGAGGATTTGATCAAGAAGAAGGAATTGAGGTAGCATGGAATCAAGTGAAGCTAAGGAACTTCTGTGATGAGCCTGCTATGGTAAAGAGGCTTTATGCTGAAGTGAGGTTATTAGAAAACTTAACAAACGAAAACATCATTGAACTTTACAGTGTTTGGACCGATGATGAACACGGCACACTGAATTTTATTACCGAGGTTTGTACTAGTGGGAATTTGAGAGAGTACAGGAAGAAACATAGGCATGTTTCGATGAAGGCGTTGAAGAAATGGTCGAGGCAGATTTTGAAAGGGTTGAATTATTTGCACACTCATGAGCCTTGCATCATTCATAGAGATCTCAATTGCAGTAATGTGTTTGTTAATGGGAATGTTGGACAGGTTAAGATTGGTGACTTGGGTTTGGCCGCAATTGTTGGGAAAAATCACATTGCGCACACAATTCTCGGCACACCAGAGTTTATGGCACCAGAACTATATGATGAAGACTACACAGAACTGGTGGATATATACTCATTTGGCATGTGTTTGTTAGAAATGGTGACATTGGAGATTCCTTACAGCGAATGCGACAATGTTGCCAAGATTTACAAGAAAGTGTCTTCTGGTATTAGACCTGCTGCCTTAAACAAGGTCAAAGATTCTGAGGTGAAGGACTTCATTGAAAAGTGTCTTGCTCAACCAAGGGTTAGGCCTTCTGCTGATGAGCTTCTCAAAGATCCTTTCTTTGACGAACTTGTTGACGATGACGATGACGAAAATGCTGATTCATACTAA 900 0.4189 MPSVNPDSSDKDSEVFAETDPTGRYGRYTELLGCGAVKKVYRGFDQEEGIEVAWNQVKLRNFCDEPAMVKRLYAEVRLLENLTNENIIELYSVWTDDEHGTLNFITEVCTSGNLREYRKKHRHVSMKALKKWSRQILKGLNYLHTHEPCIIHRDLNCSNVFVNGNVGQVKIGDLGLAAIVGKNHIAHTILGTPEFMAPELYDEDYTELVDIYSFGMCLLEMVTLEIPYSECDNVAKIYKKVSSGIRPAALNKVKDSEVKDFIEKCLAQPRVRPSADELLKDPFFDELVDDDDDENADSY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03413 299 FunFam Probable serine/threonine-protein kinase WNK1 10 107 - -
Vifa1g03413 299 Gene3D Phosphorylase Kinase; domain 1 9 107 - -
Vifa1g03413 299 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03413 299 Gene3D Transferase(Phosphotransferase) domain 1 109 289 - -
Vifa1g03413 299 CDD STKc_WNK 24 284 - -
Vifa1g03413 299 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 286 - -
Vifa1g03413 299 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03413 299 SUPERFAMILY Protein kinase-like (PK-like) 16 289 IPR011009 -
Vifa1g03413 299 FunFam probable serine/threonine-protein kinase WNK9 109 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03413 Vifa-Chr1 531138617 531139807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03413 5 288 MAP Kinase Kinase Kinase AT5G55560 79.225 1.50e-176 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vifa1g03413 Pkinase 4.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03413 K08867 - pvy:116111266 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03413 1 531138617 531139807 Vifa1g03413 1 531138617 531139807 ECH
Vifa1g03413 1 531138617 531139807 Vifa1g03413 1 531138617 531139807 PCT