Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03412 ATGAAGAACACAAGAGACTTCACAATGTTCTTAATATCTTTCTTCATGATAATGTTCTATTCAAGAGGTGAATTATTATCATCATCACCATCATCAGAGTCTCATTCTTTTTTCACTTTCCTTAAAGCTCTTGATTCAAACAATGTTCTCGACATCACCAACACATCAAATCCATGTTTTAACAACAAGTTCAATGGTGTAACATGCAACTCAAATGCTACAAATATTATAGAGATAAAACTTGATAACATGAGCCTCAGTGGCATATTTGATGTAGATTCATTATGCAAACTCCAAAACCTTAGAGTTGTTAGTTTAGCTAATAATAATCTCAAAGGGAACATTTCAAGCTCTATTTTGCACTGTACAAGTTTGGTTTCTTTAAATGTAACCAATAATAAATTAAGTGGTAGGTTACCAAAGGGATTGAAAAGATTGAAATGTCTTAAGAATTTAGATTTATCTAACAATAATTTTTCTAGTAATTATATGGTTCAAATTAGTAAGCTAGAGAGTGAAATTGTTGTAGATAGAATAGAACCAACACCAAGTTCTTTAAATTCTAATGATAAATCTGAACATGGAAAGAAATCATGGTATTCCCATATTGAGATTTTGGTTGGTTTAGTTTTGGGAATTGGGTTGCTTTTATCATCACTATACTTTATGGTGAAGAAATCATCTAAATTAATGGGAGAGAGAGAGGTGAAGAAGAAGCATATAGTTTCTCCTATGAAAAAGGTGACAAGTGAAGTGAGATTAAAAGGGGGTGCTAATAGTAATTCAGAGCTTGTGTTCTTTGTTGAAGATCATGAAAGGTTTAGTTTGGAGGATTTATTAAGAGCTAAAGCTGATTTGAGAAGTGAGAACTTTTGGAGTAGTCTTTTTAAGGTGAAACTTGAGAATAATGTTGAATATGGAGTGAAGAGAATGAAGAATTTGCAGGTTTCTTGTGATGAGTTTTGTGAAATCTTGAAGAAGATAAGTGAAGTGAAACATCAAAATATTCTCCCTCTTGTTGGTTATCGTTGTACAAGTGAAGAAAAACTTATCATTTACAAATATCAAAGCAATGGAAGCTTGCTCAATCTTTTGAATGATTATATAGCAAAGAGAAAAGTTTTTCCATGGAAACTTCGTCTCGAAATAGCACGTGGAATTGCGAGGGGTTTGGCCTTCATATACAAGAAATCGGAAGAAGGAGAGATCAATATCCCTCATGGAAACATCAAGCTATCGAATATTCTTCTTAATGAAAAAAACGAAGCAGTAATAAGCGAACACGGTTTATCAAAATTCTTCGAACCAAACCGAGGAACTACTCTCTTTTCCTCTCATGGACACATGGCCCCCGAAAGAAGTTTAACTGAAAAAGGCGACGTCTATAGCTTCGGAGTGATTCTACTAGAACTACTAACTGGACAAAGCACAGAAGCTAGTAGAATCGATCTTGTTAGATGGGTGAGATCAATGGTGAGAGAGGAATGGACAGGAGAGGTTTTTGATAAAGAGGTTAGAGAGAATGATCAACAAGGTGCATTTTCATTGTTGAATATTGCTCTTAAGTGTGTGTCTGGTTTACAAGAAAATAGGCCAAATATTGAAGAGGTTTTGGAGATAATAGAGGGGGTTATGAATGCACATGAAAAGCAAGAGTTGGAAGTTTCTGCTTCAAAATGTTGTTCAAGTGGATCTAATCAAGAATGTTGTTCACTTCATCAAATCATACCTGATACATGGGATTCTCCTGGATCAAATTATTGA 1764 0.3418 MKNTRDFTMFLISFFMIMFYSRGELLSSSPSSESHSFFTFLKALDSNNVLDITNTSNPCFNNKFNGVTCNSNATNIIEIKLDNMSLSGIFDVDSLCKLQNLRVVSLANNNLKGNISSSILHCTSLVSLNVTNNKLSGRLPKGLKRLKCLKNLDLSNNNFSSNYMVQISKLESEIVVDRIEPTPSSLNSNDKSEHGKKSWYSHIEILVGLVLGIGLLLSSLYFMVKKSSKLMGEREVKKKHIVSPMKKVTSEVRLKGGANSNSELVFFVEDHERFSLEDLLRAKADLRSENFWSSLFKVKLENNVEYGVKRMKNLQVSCDEFCEILKKISEVKHQNILPLVGYRCTSEEKLIIYKYQSNGSLLNLLNDYIAKRKVFPWKLRLEIARGIARGLAFIYKKSEEGEINIPHGNIKLSNILLNEKNEAVISEHGLSKFFEPNRGTTLFSSHGHMAPERSLTEKGDVYSFGVILLELLTGQSTEASRIDLVRWVRSMVREEWTGEVFDKEVRENDQQGAFSLLNIALKCVSGLQENRPNIEEVLEIIEGVMNAHEKQELEVSASKCCSSGSNQECCSLHQIIPDTWDSPGSNY 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03412 587 Gene3D Phosphorylase Kinase; domain 1 246 355 - -
Vifa1g03412 587 PANTHER OS05G0588300 PROTEIN 10 171 - -
Vifa1g03412 587 SUPERFAMILY L domain-like 36 171 - -
Vifa1g03412 587 Pfam Protein tyrosine and serine/threonine kinase 301 539 IPR001245 GO:0004672|GO:0006468
Vifa1g03412 587 Gene3D Ribonuclease Inhibitor 34 194 IPR032675 -
Vifa1g03412 587 SUPERFAMILY Protein kinase-like (PK-like) 293 541 IPR011009 -
Vifa1g03412 587 Gene3D Transferase(Phosphotransferase) domain 1 357 567 - -
Vifa1g03412 587 ProSiteProfiles Protein kinase domain profile. 281 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03412 Vifa-Chr1 530998312 531000511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03412 28 567 Receptor kinase-like Gene Family AT4G23740 29.308 1.66e-70 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g03412 PK_Tyr_Ser-Thr 4.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03412 - - gmx:100807491 694.501