Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03403 ATGAAGTTGGTATCCCTAGGAAGTTTACTAGTTGGATTATGGCAGCTGTTAAAGGATCATCAACTGGATGCATGGAAAGCTGCTCTAACACAAGTAGCTGGACTCTCTGGTTGGGATTCAAAAGTCACCAGACCAGAAAACATGCTTATTGAAGAAATTGTGAAAGATATTTCAAGAAAATTGAATTTGAATCACTCTTTCTTGAACGATTATCAGGGTATGATTGGAATTGAGAAGCATATTGAACAAATACAATCTTTGTTGCACCTTGAGTCAGAAGACTTTAGAGTTGTAGGAATTTGGGGTATGGGAGGAATAGGCAAAACAACAATTGCTAGAGCAATATATCACAAACTGGCAACTAATTTCAGTTCAAGGAGTATTATTCTAAATGTTGGACAAGAAGTAGAAAGAGCTGGAGTATACCATGTGAAAAACAAATATATATCAGAGCTTCTAGGGGAAGACAGCACATCCTCTGGATTAAGTCTCAAAAGTACAAAGGCTCTCCTTGTTCTTGATGATGTGTGTCATTCAAATCAAGTTAAAGATTTAATTGGAACCTGCAGTAACTTCGGGGAGGGTACTAGAATCATTGTGACTAGTAGAGACATGCAGGTACTAAAGAACGCCGAAGCTAGTAAGATATATGAAGTTAAAGAGATGAGTTTTAAAGATTCTCTACAACTCTTCAGTTTAAATGCCTTTAAACAAAACTATCCCATAGAACCTTATGTCGACTTATCAAAAAAGGGAACCACGTTTGAAGTAGGAGCGACGGAGATGGCTGAGGAAGTGACGGCAAGTGACGGTGACGGCAAGTGA 825 0.383 MKLVSLGSLLVGLWQLLKDHQLDAWKAALTQVAGLSGWDSKVTRPENMLIEEIVKDISRKLNLNHSFLNDYQGMIGIEKHIEQIQSLLHLESEDFRVVGIWGMGGIGKTTIARAIYHKLATNFSSRSIILNVGQEVERAGVYHVKNKYISELLGEDSTSSGLSLKSTKALLVLDDVCHSNQVKDLIGTCSNFGEGTRIIVTSRDMQVLKNAEASKIYEVKEMSFKDSLQLFSLNAFKQNYPIEPYVDLSKKGTTFEVGATEMAEEVTASDGDGK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03403 274 Gene3D - 7 59 IPR035897 -
Vifa1g03403 274 Gene3D - 60 220 IPR027417 -
Vifa1g03403 274 PRINTS Disease resistance protein signature 97 112 - -
Vifa1g03403 274 PRINTS Disease resistance protein signature 163 177 - -
Vifa1g03403 274 Pfam NB-ARC domain 78 240 IPR002182 GO:0043531
Vifa1g03403 274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 250 IPR027417 -
Vifa1g03403 274 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 253 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03403 Vifa-Chr1 530047213 530048400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03403 25 270 WRKY Transcription Factor Family AT4G12020 32.812 1.92e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03403 - - gmx:100814075 293.893