LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g03402	ATGAAAAGAGCCAATGTTATAAAACGCCGAGTTAACGGTCCTAGAGAGGAGACAGCTTTGAATGACTGTGAGCAACTAATGGACTTGTCCATGGATAGAGTTTGGGACTCAGTGTTGACTTTAACAAAAAATAACGTTGAATCACAGCAAGATGCACACACATGGCTAAGTAGTATACTCACTAACCATGCAACTTGTTTGGATGGTTTAGAAGGTGCGTCTAGGGCCGTGATGGAAAATGATCTTGAGGACTTGATATCCAGAGCTAGATCTTCTCTTGCTGTGCTTGTTTCTGTCTTACCTAAACCGGATCACAAGGAATTCATTGATGAATCATTGAATGGGGAATTTCCCTCGTGGGTTTCAAACAAGGATATGAGGCTTTTGGAGTCTAGAATTAGGGACATTCAGGCCAATGTTGTGGTGGCTAAAGATGGGAGCGGTAAGTTCAAGACTGTGGCTGAGGCTGTGGCAACTGCACCAGACAACGGTAAGACAAGGTATGTTATCTATGTGAAAAGGGGAACCTACAAAGAGAAGGTAGAAATCGGTAAGAAAAAGACGAATGTTATGCTTGTCGGTGATGGTATGGATGCAACAATAATCACAGGCAGCTTGAATTTTATCGATGGAACAACCACTTTCAATAGTGCAACTGTTGCTGCTGTTGGGGATGGGTTTATAGCTCAGGACATTGGGTTCCAAAACACGGCAGGCCCAGAAAAGCACCAGGCAGTTGCTCTCCGTGTTAACTTGCAGCAAGGCTTTGGACAAATTTTATACTGCTATGGGCAGCATAGGGATGCTTTGAGAGTAGGTCTTCTTGGACTGCTTTTGTAG	840	0.4369	MKRANVIKRRVNGPREETALNDCEQLMDLSMDRVWDSVLTLTKNNVESQQDAHTWLSSILTNHATCLDGLEGASRAVMENDLEDLISRARSSLAVLVSVLPKPDHKEFIDESLNGEFPSWVSNKDMRLLESRIRDIQANVVVAKDGSGKFKTVAEAVATAPDNGKTRYVIYVKRGTYKEKVEIGKKKTNVMLVGDGMDATIITGSLNFIDGTTTFNSATVAAVGDGFIAQDIGFQNTAGPEKHQAVALRVNLQQGFGQILYCYGQHRDALRVGLLGLLL	279

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g03402	279	ProSitePatterns	Pectinesterase signature 1.	164	183	IPR018040	-
	Vifa1g03402	279	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	9	77	IPR035513	-
	Vifa1g03402	279	Gene3D	Invertase/pectin methylesterase inhibitor family protein	1	99	IPR035513	-
	Vifa1g03402	279	PANTHER	PECTINESTERASE	12	253	-	-
	Vifa1g03402	279	NCBIfam	pectinesterase inhibitor domain	8	78	IPR006501	GO:0004857
	Vifa1g03402	279	Pfam	Plant invertase/pectin methylesterase inhibitor	13	89	IPR006501	GO:0004857
	Vifa1g03402	279	CDD	PMEI-like_4	1	99	-	-
	Vifa1g03402	279	SUPERFAMILY	Pectin lyase-like	137	251	IPR011050	-
	Vifa1g03402	279	Gene3D	-	133	261	IPR012334	-
	Vifa1g03402	279	Pfam	Pectinesterase	139	252	IPR000070	GO:0030599\|GO:0042545

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g03402	Vifa-Chr1	529989201	529997754	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g03402	10	254	Carbohydrate Esterase	AT1G11580	59.127	1.35e-94	288

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g03402	K01051		-	gmx:100815836	389.423

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