Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03402 ATGAAAAGAGCCAATGTTATAAAACGCCGAGTTAACGGTCCTAGAGAGGAGACAGCTTTGAATGACTGTGAGCAACTAATGGACTTGTCCATGGATAGAGTTTGGGACTCAGTGTTGACTTTAACAAAAAATAACGTTGAATCACAGCAAGATGCACACACATGGCTAAGTAGTATACTCACTAACCATGCAACTTGTTTGGATGGTTTAGAAGGTGCGTCTAGGGCCGTGATGGAAAATGATCTTGAGGACTTGATATCCAGAGCTAGATCTTCTCTTGCTGTGCTTGTTTCTGTCTTACCTAAACCGGATCACAAGGAATTCATTGATGAATCATTGAATGGGGAATTTCCCTCGTGGGTTTCAAACAAGGATATGAGGCTTTTGGAGTCTAGAATTAGGGACATTCAGGCCAATGTTGTGGTGGCTAAAGATGGGAGCGGTAAGTTCAAGACTGTGGCTGAGGCTGTGGCAACTGCACCAGACAACGGTAAGACAAGGTATGTTATCTATGTGAAAAGGGGAACCTACAAAGAGAAGGTAGAAATCGGTAAGAAAAAGACGAATGTTATGCTTGTCGGTGATGGTATGGATGCAACAATAATCACAGGCAGCTTGAATTTTATCGATGGAACAACCACTTTCAATAGTGCAACTGTTGCTGCTGTTGGGGATGGGTTTATAGCTCAGGACATTGGGTTCCAAAACACGGCAGGCCCAGAAAAGCACCAGGCAGTTGCTCTCCGTGTTAACTTGCAGCAAGGCTTTGGACAAATTTTATACTGCTATGGGCAGCATAGGGATGCTTTGAGAGTAGGTCTTCTTGGACTGCTTTTGTAG 840 0.4369 MKRANVIKRRVNGPREETALNDCEQLMDLSMDRVWDSVLTLTKNNVESQQDAHTWLSSILTNHATCLDGLEGASRAVMENDLEDLISRARSSLAVLVSVLPKPDHKEFIDESLNGEFPSWVSNKDMRLLESRIRDIQANVVVAKDGSGKFKTVAEAVATAPDNGKTRYVIYVKRGTYKEKVEIGKKKTNVMLVGDGMDATIITGSLNFIDGTTTFNSATVAAVGDGFIAQDIGFQNTAGPEKHQAVALRVNLQQGFGQILYCYGQHRDALRVGLLGLLL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03402 279 ProSitePatterns Pectinesterase signature 1. 164 183 IPR018040 -
Vifa1g03402 279 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 9 77 IPR035513 -
Vifa1g03402 279 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 99 IPR035513 -
Vifa1g03402 279 PANTHER PECTINESTERASE 12 253 - -
Vifa1g03402 279 NCBIfam pectinesterase inhibitor domain 8 78 IPR006501 GO:0004857
Vifa1g03402 279 Pfam Plant invertase/pectin methylesterase inhibitor 13 89 IPR006501 GO:0004857
Vifa1g03402 279 CDD PMEI-like_4 1 99 - -
Vifa1g03402 279 SUPERFAMILY Pectin lyase-like 137 251 IPR011050 -
Vifa1g03402 279 Gene3D - 133 261 IPR012334 -
Vifa1g03402 279 Pfam Pectinesterase 139 252 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03402 Vifa-Chr1 529989201 529997754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03402 10 254 Carbohydrate Esterase AT1G11580 59.127 1.35e-94 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03402 K01051 - gmx:100815836 389.423