Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03401 ATGGCAGAAAACATGAAAGAACCGCGTCTCGTTGCTAGGAAGTTCTTAGCCAAACCTCAACGAGAAGGTGTTGGTGCTGTTGTTAGAAGAAGCATAGGAAGATTTGAGCTCAAGTACTTTGATCCTTTCCTTGTCTTGGATGAATTCTCAGTTGCTGCTCCTGCTGGATTTCCTGATCATCCACATAGAGGTTTTGAGACTGTCACGTATATGTTACAGGGTGCTATAACACATGAAGATTTTGAAGGACACAAAGGAACAATTGAAGCTGGTGACTTGCAGTGGATGACTGCTGGCAGAGGGATTGTCCATTCAGAAATGCCTGCTGCTCAAGGAATCCAAAAGGGTCTACAACTATGGATCAACCTTGCTTCTCAACATAAAATGATTGAACCAAAGTATCAAGAAAGTTTAAGCAAGGACATAGTAGAAGCTACAAAAGATGGTATCATGGTTAGGGTTATAGCAGGGGAAGCACTTGGAATAAAGTCTCCAATTTACACAAGAACACCAACAATGTACTTGGATTTTACTCTTAAACCCGGATCACACTTACAACAACTCGTACCAAAATCTTGGAATGCTTTTGTGTATGTTTTGGAAGGAGAGGGTATTTTCGGAAGCCAAAACTCTCATCCTACAACCTCTCACCATATTCTTCTTCTAGGTTATGGGGATGGTGTAGAGGCATGGAATAAATCTTCTAAGGTACTAAGGTTCATTTTGGTTGGAGGAGAACCATTAGGTGAACCAATGGTGCAACTTGGACCCTTTGTGATGAATACTCAACAAGAGATTGACCAAACTATTGATGATTTCGAAAACTATACCAATGGCTTTGAGAAAGCAAGATATTGGAGGTCTTAA 867 0.4072 MAENMKEPRLVARKFLAKPQREGVGAVVRRSIGRFELKYFDPFLVLDEFSVAAPAGFPDHPHRGFETVTYMLQGAITHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPAAQGIQKGLQLWINLASQHKMIEPKYQESLSKDIVEATKDGIMVRVIAGEALGIKSPIYTRTPTMYLDFTLKPGSHLQQLVPKSWNAFVYVLEGEGIFGSQNSHPTTSHHILLLGYGDGVEAWNKSSKVLRFILVGGEPLGEPMVQLGPFVMNTQQEIDQTIDDFENYTNGFEKARYWRS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03401 288 PIRSF Pirin 7 287 IPR012093 -
Vifa1g03401 288 PANTHER PIRIN-RELATED 5 288 IPR012093 -
Vifa1g03401 288 FunFam pirin 22 158 - -
Vifa1g03401 288 Pfam Pirin C-terminal cupin domain 174 278 IPR008778 -
Vifa1g03401 288 Pfam Pirin 28 121 IPR003829 -
Vifa1g03401 288 CDD cupin_pirin_C 171 247 - -
Vifa1g03401 288 Gene3D Jelly Rolls 22 274 IPR014710 -
Vifa1g03401 288 SUPERFAMILY RmlC-like cupins 9 286 IPR011051 -
Vifa1g03401 288 Gene3D Jelly Rolls 143 248 IPR014710 -
Vifa1g03401 288 CDD cupin_pirin_N 26 123 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03401 3 284 Calmodulin-binding Proteins AT3G59220 61.268 4.91e-130 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03401 K06911 - gmx:100790637 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03401 1 529884508 529886453 Vifa1g03401 1 529884508 529886453 ECH
Vifa1g03401 1 529884508 529886453 Vifa1g03401 1 529884508 529886453 PCT