Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03400 ATGAATATGTCTTTGGTTCTATTATTTCATCTTTTGCTTCTTGTCTTTTGTTGTATCTCTTCATTTGCTAGTGGAGCTACTCTCTTAGAAGAAGAAGTACAAGTTATGAAAGACATAGCTAAGACACTTAGGAAGAATGATTGGGATTTCAGCATAGATCCATGTAGTGGACAAAGTAATTGGACATCTTCAGTGCAAGTGAAAGGGTTTGAAAATGCTGTCACTTGCAATTGCACTTTTGCCAATGCCACTATCTGCCATATTGTAAGCATTGTTCTAAAGTCACAAAATCTTTCTGGCACACTTCCAAGGGAACTTGTGAAATTACCTTACCTCCAACAAATTGATCTCACACGTAACTACCTTAACGGTACAATCCCTCCACAATGGAGCTCCATCAATCTTGTCAACATTTCACTATTTGGAAATCGCTTAACAGGTCCAATTCCAAAAGAATTTGGAAAAATCACCACCTTGAAAAGCTTGGTTTTGGAATTCAATCACTTTTCCGGAAAGCTTCCTCCGGAGCTTGGGAATCTTCACCAGCTTGAAAGATTGCTTCTTACTTCCAACTATTTTACTGGAAATTTACCAGCTACATTTGCTAAGCTCACTAAACTTAAGTACCTTCGACTTGGCGACAATCAGTTCTCTGGGACTATTCCTGTTTTCATTCAGAGTTGGACAAGTCTTGAGAGGCTGGTCATACAAGGGAGTGGTTTAAGTGGTCCAGTTCCTTCTGCAATTTCATATCTGAAAAATCTCACCGACTTGAGAATAAGTGACTTGAAAGGATCAGATTCTCCTTTTCCGCAACTTATTAACTTGACAAATTTGGAAACATTAGTATTGAGGAGTTGCAATCTTATAGGAACAGTTCCTGAGTATCTTGGAAATATCACCAATTTAAGATCATTAGACCTAAGTTTTAACAAGTTAAGTGGAAAAATTCCGAACACCTTGGGTGGCTTGGAGAACATAAATATACTATACTTAACTGGAAACCTTTTTACTGGACCACTGCCAAATTGGATAGCTAGACCGGACTACACAGATCTTTCGTATAACAATTTGACCATTGAAAATCCAGAGCAGTTGACATGTCAACAGGGAACCTTGAACTTGTTTGCATCATCTTCAGAGGGAAGTAACTTGGGAACGGTTTCATGTTTGGGGAACATTGGTTGTCCTAAAACTTGGTACTCTCTCCATATAAATTGCGGTGGTAAGCTCATAACCTCAAATGAGAGCTTGACATATGACGATGATTCATATGAAGTTGGACCAGCAAGCTTTCACCGGACTGAATCAAACTGGGCACTCAGCAACACTGGTCACTTTTTTGATAGTGGCCTTGTGGACTACTATACCTGGTCTAATACAACTGACCTTAACATCGACAACGGAGAACTGTATATGGATGCACGCGTTTCTCCTCTTTCTCTAACATATTATGGGTTTTGCCTGGGAAATGGAAACTACTCAGTAAAACTCCATTTTGCAGAGATAATGTTCACCGATGATCAAACATATAATAGCCTTGGAAGGCGCATATTTGACATATATGTTCAGAGAAGGCTGGTGCTGAAGGATTTCGATATTGCAAAAGAAGCTGGTGGAGTTGGTAAGGCAATCATAAAGAATTTCACTGCTGTTGTGACTAGTAATACCTTGGAGATTCGCCTTCAGTGGGCTGGGAAAGGGACAACTGCTATTCCATTTGGATCCGTATATGGTCCTCTTATATCGGCTATATCGGTTGATCCTGACTTTACACCCCCGGTGGAAAAAGGAAGTGGCATACATGGGTGGGATATTGTTGCAGTTGTAGTTGCTGGAGCACTATTTATCTTCATCTTATTTGGTATAGCTCAGTGGAGAAGACGTCGACGACGACAAATAGGTCCTCTAGAAAGAGAGGTAAAGGGTTTAGATTTCCAACCTGGGTTGTTTACTTTACGGCAAATCAAAGCAGCAACTAACAACTTCGATATAGCCTTCAAAATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGTGTTCTTACGGACGGCACAACAGTAGCAGTTAAGAAACTTTCTTCAAAATCAAAGCAAGGGAATCGCGAATTTATAAATGAGATTGGCTTGATTTCTGCTTTGCAACACCCATGTCTAGTTAAGCTCTATGGTTGTAGTATGGAGGGAGATCAGTTATTGCTGATATATGAGTACATGGAAAATAATAGCCTTGCTTGTGCTTTGTTTGCCAGAGGAAAAGATCAATTGAAACTGGCTTGGTCGACAAGGAAGAGAATTTGCGTTGGTATCGCTAGAGGTTTGGCTTATCTTCATGAAGAATCGAGACTAAAAATAGTTCACAGAGACATCAAGGCTACTAATGTGTTACTGGATAAAGATCTCAATCCAAAGATATCTGATTTTGGTTTGGCTAAGCTTAAAGATGACGGATACACTCATATAACCACTAGAGTAGCTGGCACTTATGGATATATGGCTCCAGAATATGCTATGCACGGATATTTGAGTGAGAAAGCAGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATTGTTAGTGGGAAGCACAATACCATGAGTTGGCCTAAGGAAGAATGCTTCTCTATTGTTGATTGGGTGCATCTCTTGAAAGAAGAAGGTAATATAATGGACCTAGTTGATGAAAGATTAGGTGAAGATTTCGAAAAAGAGGAAGTAATGGTCATGATCAATGTGGCTCTTTTATGCACTCATGTTTCTCCAATGCACAGGCCAACCATGTCATCAGTGGTAAGCATGCTTGAAGGAAAATCTGTTGTTGAAGAAGTTGTGTCCGACACAAGCCAAGTTTTTGAAGGGAAAAAGTTGGAGATGATTCAACAGTATTACCAACAAGGTGAAAAAAATGTTGCGCCTGAGACTGAGACTGAGGAAGAGAGCATCTTAATAGATGCAACTGCAGAATACATGTCTGATACAAATCTACATTCTGTTAACATGGATTCTCCTTATAGAAGTTTCAACACTCTGTAA 3033 0.3966 MNMSLVLLFHLLLLVFCCISSFASGATLLEEEVQVMKDIAKTLRKNDWDFSIDPCSGQSNWTSSVQVKGFENAVTCNCTFANATICHIVSIVLKSQNLSGTLPRELVKLPYLQQIDLTRNYLNGTIPPQWSSINLVNISLFGNRLTGPIPKEFGKITTLKSLVLEFNHFSGKLPPELGNLHQLERLLLTSNYFTGNLPATFAKLTKLKYLRLGDNQFSGTIPVFIQSWTSLERLVIQGSGLSGPVPSAISYLKNLTDLRISDLKGSDSPFPQLINLTNLETLVLRSCNLIGTVPEYLGNITNLRSLDLSFNKLSGKIPNTLGGLENINILYLTGNLFTGPLPNWIARPDYTDLSYNNLTIENPEQLTCQQGTLNLFASSSEGSNLGTVSCLGNIGCPKTWYSLHINCGGKLITSNESLTYDDDSYEVGPASFHRTESNWALSNTGHFFDSGLVDYYTWSNTTDLNIDNGELYMDARVSPLSLTYYGFCLGNGNYSVKLHFAEIMFTDDQTYNSLGRRIFDIYVQRRLVLKDFDIAKEAGGVGKAIIKNFTAVVTSNTLEIRLQWAGKGTTAIPFGSVYGPLISAISVDPDFTPPVEKGSGIHGWDIVAVVVAGALFIFILFGIAQWRRRRRRQIGPLEREVKGLDFQPGLFTLRQIKAATNNFDIAFKIGEGGFGPVYKGVLTDGTTVAVKKLSSKSKQGNREFINEIGLISALQHPCLVKLYGCSMEGDQLLLIYEYMENNSLACALFARGKDQLKLAWSTRKRICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLKDDGYTHITTRVAGTYGYMAPEYAMHGYLSEKADVYSFGVVALEIVSGKHNTMSWPKEECFSIVDWVHLLKEEGNIMDLVDERLGEDFEKEEVMVMINVALLCTHVSPMHRPTMSSVVSMLEGKSVVEEVVSDTSQVFEGKKLEMIQQYYQQGEKNVAPETETEEESILIDATAEYMSDTNLHSVNMDSPYRSFNTL 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03400 1010 FunFam Putative LRR receptor-like serine/threonine-protein kinase 739 946 - -
Vifa1g03400 1010 ProSiteProfiles Protein kinase domain profile. 663 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03400 1010 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 400 590 - -
Vifa1g03400 1010 Pfam Protein tyrosine and serine/threonine kinase 668 934 IPR001245 GO:0004672|GO:0006468
Vifa1g03400 1010 Coils Coil 26 46 - -
Vifa1g03400 1010 SUPERFAMILY Protein kinase-like (PK-like) 645 939 IPR011009 -
Vifa1g03400 1010 CDD STKc_IRAK 669 936 - -
Vifa1g03400 1010 Pfam Leucine rich repeat 277 336 IPR001611 GO:0005515
Vifa1g03400 1010 Gene3D - 400 589 - -
Vifa1g03400 1010 Gene3D Ribonuclease Inhibitor 265 376 IPR032675 -
Vifa1g03400 1010 Gene3D Ribonuclease Inhibitor 192 264 IPR032675 -
Vifa1g03400 1010 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 270 368 - -
Vifa1g03400 1010 Gene3D Transferase(Phosphotransferase) domain 1 739 951 - -
Vifa1g03400 1010 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 32 191 - -
Vifa1g03400 1010 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 959 - -
Vifa1g03400 1010 SUPERFAMILY L domain-like 82 359 - -
Vifa1g03400 1010 Gene3D Ribonuclease Inhibitor 29 191 IPR032675 -
Vifa1g03400 1010 Pfam Malectin domain 402 585 IPR021720 -
Vifa1g03400 1010 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 738 - -
Vifa1g03400 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Vifa1g03400 1010 ProSiteProfiles Leucine-rich repeat profile. 302 325 IPR001611 GO:0005515
Vifa1g03400 1010 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 264 - -
Vifa1g03400 1010 SMART serkin_6 663 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03400 1010 Gene3D Phosphorylase Kinase; domain 1 629 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03400 Vifa-Chr1 529872450 529893219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03400 19 986 Receptor kinase-like Gene Family AT1G53420 52.658 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03400 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03400 - - psat:127081874 1733.38