LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g03399	ATGAGGATTTTCTCTCAGTTTCTCTTCCTTTCACTCATTGCCATTTTGTTCTTATCTCTAACAGCTTTTGGGGCTGATACTATTCACCCGGACGAAAAGGAAGCTCTTGAAGATATAGCTAAATCACTTGGGAAGAAGGATTGGAACTTTGATATTGATCCCTGCAGCAACAAACCTAACTGGGCTACACCAAAGCCTACGATGTCCTCTTCCAGATTGAGTATTGTAGTGAATAATGTCACCTGCAACTGCAGTGTGCCTGGTGACAACTTCTGCCATGTTGTTTCAATAACTTTGAAAGGGCAAAATCTCCCCGGCACTCTCCCACCAGAACTGGCCAGACTGCATTACCTTCAAAACATTGACCTCTCTCGCAATTACTTGAACGGTACAATTCCTAAAGAATGGGGCTCCATGGTGAATCTTCTTAACATTACTCTCCCTGGAAATCGATTGACGGGTTCAATACCAAAGGAGATTGCAAAGATATCTTCCCTGATTCAGTTGGAGTTAACGGCCAATCAAATGTCTGGGAATATTACTTCTGAGCTTGGGAATCTACCCCTGATTCGAACACTGCGATTTTCCTCTAACAATTTTTCTGGAGAACTACCTGCAACATTGGCCAAGCTCACTACATTGCGAGATTTCCAAATTTCGGACAACCAATTCTCAGGACAGATACCTGATTTTATCCAGAACTGGAGAAATATCAATACACTAATCATTCAAGGGAGTGGATTAAGTGGGTCAATTCCTTCCAAAATTTCACTTTTGAGAAACTTAATTGACTTGAGAATTAGTGATTTGAATGGATCTGAATATGCACCTTTGCCACAACTTAATAATCTGACATTGTTAGAAAAACTGATTCTAAGGAATTGCAACATCAATGGAGCACTACCCGACCTCGGGACTATGAAAACATTGAAATACTTAGACTTCAGCTTTAACAAATTTAGTGGAACAATTCCGAGTGCCTATGCTGACATATACGGTGTGAAATTCATATTTTTAACTGGAAACCTTCTCACTGGACTGGTGCCTTCTTGGAAAAAGAACATAGACGTAGATCTTTCATACAATAGCTTCAGCATCAACCAAGAAAGTCAGATATGTCAAAGTGATAAATTAAACTTATTTTCTAACTCATGGGCAAACAATGACATAGGAGCAGTCTCGTGTTTGAGAGAATGTCGCAAACCCTCATACTCCCTTTATATAAATTGTGGTGGAAAGCAAGAACAAGTCAATGGAGAAAGTTATGATGATGATTCAGATTCACCTGGACCAGCTAAACTCCATGTTAGTGCAACAGGAAAATGGGCATTTAGCACCACTGGTATATTCATTGATGGTGATCAACTTGGAGAAACTTATTCCCTGCCAAATTTTACTCCACTTACTATGGAAGATGCTAAGTTGTACATGAATGCACGTGGTTCTCCCATTTCTTTGACTTATTATGGGTTTTGTCTGGAAAATGGAAGTTACACGGTAAATCTTCATTTTGCTGAAATAATGTTCACAGACGATCAAACTTATGCTAGTCTTGGAAGACGTGTATTTGATATCTACCTACAGGGAAAGCCGGTGCAAAAGGACTTTAATATTGCAAAAGAAGCAGGGGGAGTTGGTAAGGAAGTCATAAAACAGTTCAAAGATGTTTTTGTTAACAGTGGTACCTTGGAGATCCGTTTGTATTGGGCTGGAAAAGGGACACAGTTTCTCCCAAATAGATCAGTATACGGTCCTCTTATATCAGCTATATCAGTGGAATCTGCAAACTCTCCACCTGGAAGCCTATCTGCAAGAGCTGTGGTTGGAATTGTGGTTGCAGCAGCAGTTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAAAACATTAGCAAGAGAGCTGAGGAGTTTGGACGTTCAAACGGGTTTATTTACCTTGAGACAAATCAAAGCAGCTACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCCGTGTATAAGGGATGTTTACCCAATGGGACATTGATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTCTTAAATGAAATAGGCATGATATCTGCTTTGCAACATCCTTATCTTGTTAAACTCCATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACCTGGAAAACAATAGTCTAGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATTAAATTAGATTGGCCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTAGCATACCTCCATGAAGAATCAAGACTAAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTATTGCTTGATACAAATCTTGACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGACGAGGAGGACAATACTCACATTAGTACAAGAATTGCTGGTACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATCGTTAGTGGAAAGAGCAACACCATGTTTCGATCAAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAGGGGTGACCTATTGGAGCTAGTTGATAGAAGATTAGGTTTAGATTTCAACAAAAAGGAAGCTATGGTGGTAATCAATGTGGCTCTTCTATGCACCAATGTCACATCAAATCTTAGGCCCACCATGTCGTCGGTGGTAAGTTGCCTTGAAGGAAGGAATGCGGTTCCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAATTAGAAGTAGACCTTTATCCTGTTCACCTTGATTCTTCCTATTGGGAGGAAAGAAATTAA	2925	0.3952	MRIFSQFLFLSLIAILFLSLTAFGADTIHPDEKEALEDIAKSLGKKDWNFDIDPCSNKPNWATPKPTMSSSRLSIVVNNVTCNCSVPGDNFCHVVSITLKGQNLPGTLPPELARLHYLQNIDLSRNYLNGTIPKEWGSMVNLLNITLPGNRLTGSIPKEIAKISSLIQLELTANQMSGNITSELGNLPLIRTLRFSSNNFSGELPATLAKLTTLRDFQISDNQFSGQIPDFIQNWRNINTLIIQGSGLSGSIPSKISLLRNLIDLRISDLNGSEYAPLPQLNNLTLLEKLILRNCNINGALPDLGTMKTLKYLDFSFNKFSGTIPSAYADIYGVKFIFLTGNLLTGLVPSWKKNIDVDLSYNSFSINQESQICQSDKLNLFSNSWANNDIGAVSCLRECRKPSYSLYINCGGKQEQVNGESYDDDSDSPGPAKLHVSATGKWAFSTTGIFIDGDQLGETYSLPNFTPLTMEDAKLYMNARGSPISLTYYGFCLENGSYTVNLHFAEIMFTDDQTYASLGRRVFDIYLQGKPVQKDFNIAKEAGGVGKEVIKQFKDVFVNSGTLEIRLYWAGKGTQFLPNRSVYGPLISAISVESANSPPGSLSARAVVGIVVAAAVIIILVFGILWWKGCFGKKKTLARELRSLDVQTGLFTLRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLHGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWPTRQKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDTNLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTMFRSKEEAFYLLDWAHLLKERGDLLELVDRRLGLDFNKKEAMVVINVALLCTNVTSNLRPTMSSVVSCLEGRNAVPEFVSDSSEVMDEKKLEVDLYPVHLDSSYWEERN	974

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g03399	974	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	632	738	-	-
	Vifa1g03399	974	Pfam	Malectin domain	405	590	IPR021720	-
	Vifa1g03399	974	SUPERFAMILY	L domain-like	72	372	-	-
	Vifa1g03399	974	Gene3D	Ribonuclease Inhibitor	275	395	IPR032675	-
	Vifa1g03399	974	Gene3D	Ribonuclease Inhibitor	166	274	IPR032675	-
	Vifa1g03399	974	FunFam	Probable LRR receptor-like serine/threonine-protein kinase RFK1	34	204	-	-
	Vifa1g03399	974	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	14	952	-	-
	Vifa1g03399	974	CDD	STKc_IRAK	669	936	-	-
	Vifa1g03399	974	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	403	595	-	-
	Vifa1g03399	974	Gene3D	Ribonuclease Inhibitor	31	165	IPR032675	-
	Vifa1g03399	974	SUPERFAMILY	Protein kinase-like (PK-like)	646	939	IPR011009	-
	Vifa1g03399	974	Gene3D	Phosphorylase Kinase; domain 1	631	738	-	-
	Vifa1g03399	974	ProSiteProfiles	Protein kinase domain profile.	663	944	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g03399	974	Pfam	Protein tyrosine and serine/threonine kinase	665	934	IPR001245	GO:0004672\|GO:0006468
	Vifa1g03399	974	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	739	946	-	-
	Vifa1g03399	974	SMART	serkin_6	663	908	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g03399	974	Gene3D	-	403	596	-	-
	Vifa1g03399	974	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	785	797	IPR008271	GO:0004672\|GO:0006468
	Vifa1g03399	974	Gene3D	Transferase(Phosphotransferase) domain 1	739	948	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g03399	Vifa-Chr1	529860229	529870589	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g03399	27	957	Receptor kinase-like Gene Family	AT1G53420	54.449	0.0	972

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vifa1g03399		PK_Tyr_Ser-Thr	1.9e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g03399	-		-	gmx:732563	1241.1