Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03392 ATGTTCACAGACGATCAAACGTATGCTAGTCTTGGAAGACGTGTATTTGATATCTACCTACAGGGAAAGCCGGTGCAAAAGGACTTTAATATTGCAAAAGAAGCAGGAGGAGTTGGTAAGGAAGTCATAAAACAGTTCAAAAATATTTTTGTTAACAGTAGTACCTTGGAGATCCGTTTGTATTGGGCTGGAAAAGGGACACAGTTTCTCCCAAATAGATCAGTATACGGTCCTCTTATATCAGCTATATCAGTGGAATCTGCAGACTCTCCACCTGGAAGCCTATCTGCAAGAGCTGTGGTTGGAATTGTGGTTGCAGCAGCAGTTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAAAACATTAGCAAGAGAGCTGAGGAGTTTGGACGTTCAAACGGGTTTATTTACCTTAAGACAAATCAAAGCAGCTACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCCGTGTATAAGGGATGTTTACCCAATGGGACATTGATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTCTTAAATGAAATAGGCATGATATCTGCTTTGCAACATCCTTATCTTGTTAAACTCCATGGTTGTTGTGTGGAGGGAGATCAATTGTTGCTGATATATGAATACCTGGAAAACAATAGTCTAGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATTAAATTAGATTGGCCAACTAGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTAGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACCAATGTATTGCTTGATACAAATCTTGACCCAAAGATATCTGATTTTGGTTTGGCAAAGCTTGACGAGGAGGACAATACTCACATTAGTACGAGAATTGCTGGTACCTATGGATATATGGCTCCGGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGCCTTGGAAATCGTTAGTGGAAAGAGCAACACCATGTTTCGATCAAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAGGGGTGACCTATTGGAGCTAGTTGATAGAAGATTAGGTTTAGATTTCAACAAAAAGGAAGCTATGGTGGTAATCAACGTGGCTCTCCTATGCACCAATGTCACTTCAAACCTTAGACCCTCCATGTCGTTGGTGGTAAGTTTTCTTGAAGGAAGGACTGTGGTACCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTATCAGATGGAAGAAAATAATTTAAGTACCACCTCACAAAGTCAGAGTATATTAAATGACGGGCCATGGACTGCCACATCTTCATCAGCTGTAGACCTTTATCCTGTTCACCTTGATTCTTCCTATTGGGAGGAAAGAAATTAA 1512 0.3955 MFTDDQTYASLGRRVFDIYLQGKPVQKDFNIAKEAGGVGKEVIKQFKNIFVNSSTLEIRLYWAGKGTQFLPNRSVYGPLISAISVESADSPPGSLSARAVVGIVVAAAVIIILVFGILWWKGCFGKKKTLARELRSLDVQTGLFTLRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLHGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWPTRQKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDTNLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTMFRSKEEAFYLLDWAHLLKERGDLLELVDRRLGLDFNKKEAMVVINVALLCTNVTSNLRPSMSLVVSFLEGRTVVPEFVSDSSEVMDEKKLEVMRQYYYQMEENNLSTTSQSQSILNDGPWTATSSSAVDLYPVHLDSSYWEERN 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03392 503 SUPERFAMILY Protein kinase-like (PK-like) 139 448 IPR011009 -
Vifa1g03392 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Vifa1g03392 503 SMART serkin_6 156 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03392 503 FunFam Putative LRR receptor-like serine/threonine-protein kinase 232 439 - -
Vifa1g03392 503 Gene3D Transferase(Phosphotransferase) domain 1 232 441 - -
Vifa1g03392 503 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 467 - -
Vifa1g03392 503 CDD STKc_IRAK 162 429 - -
Vifa1g03392 503 ProSiteProfiles Protein kinase domain profile. 156 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03392 503 Pfam Malectin domain 9 83 IPR021720 -
Vifa1g03392 503 Gene3D Phosphorylase Kinase; domain 1 124 231 - -
Vifa1g03392 503 Gene3D - 1 89 - -
Vifa1g03392 503 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 125 231 - -
Vifa1g03392 503 Pfam Protein tyrosine and serine/threonine kinase 158 426 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03392 Vifa-Chr1 529383227 529386242 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03392 1 485 Receptor kinase-like Gene Family AT1G53430 63.168 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03392 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03392 - - cam:101501658 736.487