Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03391 ATGTTCACAGACGATCAAACGTATGCTAGTCTTGGAAGACGTGTATTTGATATCTACCTACAGGGAAAGCCGGTGCAAAAGGACTTTAATATTGCAAAAGAAGCAGGAGGAGTTGGTAAGGAAGTCATAAAACAGTTCAAAAATATTTTTGTTAACAGTAGTACCTTGGAGATCCGTTTGTATTGGGCTGGAAAAGGGACACAGTTTCTCCCAAATAGATCAGTATACGGTCCTCTTATATCAGCTATATCAGTGGAATCTGACTCTCCACCTGGAAGCCTATCTGCAAGAGCTGTGGTTGGAATTGTGGTTGCAGCAGCAGTTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAAAACATTAGCAAGAGAGCTGAGGAGTTTGGACGTTCAAACGGGTTTATTTACCTTAAGACAAATCAAAGCAGCTACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCCGTGTATAAGGGATGTTTACCCAATGGGACATTGATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTCTTAAATGAAATAGGCATGATATCTGCTTTGCAACATCCTTATCTTGTTAAACTCCATGGTTGTTGTGTGGAGGGAGATCAATTGTTGCTGATATATGAATACCTGGAAAACAATAGTCTAGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATTAAATTAGATTGGCCAACTAGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTAGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACCAATGTATTGCTTGATACAAATCTTGACCCAAAGATATCTGATTTTGGTTTGGCAAAGCTTGACGAGGAGGACAATACTCACATTAGTACGAGAATTGCTGGTACCTATGGATATATGGCTCCGGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGCCTTGGAAATCGTTAGTGGAAAGAGCAACACCATGTTTCGATCAAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAGGGGTGACCTATTGGAGCTAGTTGATAGAAGATTAGGTTTAGATTTCAACAAAAAGGAAGCTATGGTGGTAATCAACGTGGCTCTCCTATGCACCAATGTCACTTCAAACCTTAGACCCTCCATGTCGTTGGTGGTAAGTTTTCTTGAAGGAAGGACTGTGGTACCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTATCAGATGGAAGAAAATAATTTAAGTACCACCTCACAAAGTCAGAGTATATTAAATGACGGGCCATGGACTGCCACATCTTCATCAGCTGTAGACCTTTATCCTGTTCACCTTGATTCTTCCTATTGGGAGGAAAGAAATTAA 1509 0.395 MFTDDQTYASLGRRVFDIYLQGKPVQKDFNIAKEAGGVGKEVIKQFKNIFVNSSTLEIRLYWAGKGTQFLPNRSVYGPLISAISVESDSPPGSLSARAVVGIVVAAAVIIILVFGILWWKGCFGKKKTLARELRSLDVQTGLFTLRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLHGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWPTRQKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDTNLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTMFRSKEEAFYLLDWAHLLKERGDLLELVDRRLGLDFNKKEAMVVINVALLCTNVTSNLRPSMSLVVSFLEGRTVVPEFVSDSSEVMDEKKLEVMRQYYYQMEENNLSTTSQSQSILNDGPWTATSSSAVDLYPVHLDSSYWEERN 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03391 502 CDD STKc_IRAK 161 428 - -
Vifa1g03391 502 Pfam Protein tyrosine and serine/threonine kinase 157 425 IPR001245 GO:0004672|GO:0006468
Vifa1g03391 502 SUPERFAMILY Protein kinase-like (PK-like) 138 447 IPR011009 -
Vifa1g03391 502 FunFam Putative LRR receptor-like serine/threonine-protein kinase 231 438 - -
Vifa1g03391 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Vifa1g03391 502 Gene3D Phosphorylase Kinase; domain 1 123 230 - -
Vifa1g03391 502 ProSiteProfiles Protein kinase domain profile. 155 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03391 502 SMART serkin_6 155 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03391 502 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 466 - -
Vifa1g03391 502 Gene3D - 1 88 - -
Vifa1g03391 502 Gene3D Transferase(Phosphotransferase) domain 1 231 440 - -
Vifa1g03391 502 Pfam Malectin domain 9 83 IPR021720 -
Vifa1g03391 502 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 124 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03391 Vifa-Chr1 529383227 529386242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03391 1 484 Receptor kinase-like Gene Family AT1G53430 63.366 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03391 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03391 - - cam:101501658 739.954