Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03390 ATGTTCACAGACGATCAAACGTATGCTAGTCTTGGAAGACGTGTATTTGATATCTACCTACAGGGAAAGCCGGTGCAAAAGGACTTTAATATTGCAAAAGAAGCAGGAGGAGTTGGTAAGGAAGTCATAAAACAGTTCAAAAATATTTTTGTTAACAGTAGTACCTTGGAGATCCGTTTGTATTGGGCTGGAAAAGGGACACAGTTTCTCCCAAATAGATCAGTATACGGTCCTCTTATATCAGCTATATCAGTGGAATCTGACTCTCCACCTGGAAGCCTATCTGCAAGAGCTGTGGTTGGAATTGTGGTTGCAGCAGCAGTTATTATCATTCTAGTATTTGAGCTGAGGAGTTTGGACGTTCAAACGGGTTTATTTACCTTAAGACAAATCAAAGCAGCTACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCCGTGTATAAGGGATGTTTACCCAATGGGACATTGATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTCTTAAATGAAATAGGCATGATATCTGCTTTGCAACATCCTTATCTTGTTAAACTCCATGGTTGTTGTGTGGAGGGAGATCAATTGTTGCTGATATATGAATACCTGGAAAACAATAGTCTAGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATTAAATTAGATTGGCCAACTAGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTAGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACCAATGTATTGCTTGATACAAATCTTGACCCAAAGATATCTGATTTTGGTTTGGCAAAGCTTGACGAGGAGGACAATACTCACATTAGTACGAGAATTGCTGGTACCTATGGATATATGGCTCCGGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGCCTTGGAAATCGTTAGTGGAAAGAGCAACACCATGTTTCGATCAAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAGGGGTGACCTATTGGAGCTAGTTGATAGAAGATTAGGTTTAGATTTCAACAAAAAGGAAGCTATGGTGGTAATCAACGTGGCTCTCCTATGCACCAATGTCACTTCAAACCTTAGACCCTCCATGTCGTTGGTGGTAAGTTTTCTTGAAGGAAGGACTGTGGTACCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTATCAGATGGAAGAAAATAATTTAAGTACCACCTCACAAAGTCAGAGTATATTAAATGACGGGCCATGGACTGCCACATCTTCATCAGCTGTAGACCTTTATCCTGTTCACCTTGATTCTTCCTATTGGGAGGAAAGAAATTAA 1458 0.3971 MFTDDQTYASLGRRVFDIYLQGKPVQKDFNIAKEAGGVGKEVIKQFKNIFVNSSTLEIRLYWAGKGTQFLPNRSVYGPLISAISVESDSPPGSLSARAVVGIVVAAAVIIILVFELRSLDVQTGLFTLRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLHGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWPTRQKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDTNLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTMFRSKEEAFYLLDWAHLLKERGDLLELVDRRLGLDFNKKEAMVVINVALLCTNVTSNLRPSMSLVVSFLEGRTVVPEFVSDSSEVMDEKKLEVMRQYYYQMEENNLSTTSQSQSILNDGPWTATSSSAVDLYPVHLDSSYWEERN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03390 485 Pfam Protein tyrosine and serine/threonine kinase 140 408 IPR001245 GO:0004672|GO:0006468
Vifa1g03390 485 CDD STKc_IRAK 144 411 - -
Vifa1g03390 485 SUPERFAMILY Protein kinase-like (PK-like) 121 430 IPR011009 -
Vifa1g03390 485 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 112 213 - -
Vifa1g03390 485 Pfam Malectin domain 9 83 IPR021720 -
Vifa1g03390 485 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 449 - -
Vifa1g03390 485 FunFam Putative LRR receptor-like serine/threonine-protein kinase 214 421 - -
Vifa1g03390 485 Gene3D Transferase(Phosphotransferase) domain 1 214 423 - -
Vifa1g03390 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Vifa1g03390 485 ProSiteProfiles Protein kinase domain profile. 138 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03390 485 Gene3D Phosphorylase Kinase; domain 1 112 213 - -
Vifa1g03390 485 SMART serkin_6 138 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03390 485 Gene3D - 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03390 Vifa-Chr1 529383227 529386242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03390 1 467 Receptor kinase-like Gene Family AT1G53430 61.980 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03390 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03390 - - gmx:100785451 717.227