Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03389 ATGACCACTACCTCTCCATATTCCTCCCTTTCACTCATTGCCATTTTCTTCTTATCTCTAACAGCTTTTGGGGCTAATACTATTCACCCGGACGAAAAGGAAGCTCTTAAAGATATAGCTAAATCACTTGGGAAGAAGGATTGGAACTTTGATATTGATCCCTGCAGCAACAAACCTAACTGGGTTACCACTCCCATACCCAAAGTCTTAGAAAACAATGTTACCTGTGACTGCTCTGTTGCTGGTGACAACTTCTGTCATGTTGTTTCAGTAATTTTGAAAGGGCAAAATCTACCCGGCACTCTCCCACCAGAACTGACGAGGTTGCGTTATCTTCAAAATATTGACCTCTCTCGCAATTACTTAAATGGTACAATTCCAAAGCAATGGGGCTCCATGATGAGTATCAGTAAAATTGCCCTCCTTGGAAATCGATTAACGGGTTCAATACCAGCTGAGATTGCAAACATTTCTACTCTCCAAATTTTGGAGTTGTGGAACAATCAAATGTCTGGAAATCTCCCCCCTGAGCTTGGAAATTTAACCCAGATTCAAACACTGCGATTTTCCTTTAACAATTTTTCTGGAGAACTACCTGCAACATTGGCCAAGCTCACTACATTGCAAGATTTCCAAATTTCGGACAACCAATTCTCAGGACAGATACCTGATTTTATCCAGAACTGGAGAAATATCAATACACTAATCATTCAAGGGAGTGGATTAAGTGGGCCAATTCCTTCCAAAATTTCACTTTTGAGAAACTTAATTGACTTGAGAATTAGTGATTTGAATGGATCTGAATATGCACCTTTGCCACAACTTAATAATATGACATCGTTAAGCAAACTGATTCTAAGGAATTGCAACATCAATGGAGCACTACCCGACCTCGGGACTATGAAAACATTGAAATACTTAGACTTCAGCTTTAACAAATTCAGTGGAACAATTCCGAATGCCTATGCTGACATAAACAGTGTGGAATTCATATGTTTAACTGGAAACCTTCTCACTGGACTGATGCCTTCTTGGAAAAAGGACATCTTCGTAGATCTTTCATACAATAACTTCAGCATCAACCAAGAAATTCAGATATGTCCAAGTGATAAATTAAACTTGTTTTCTAACTCATGGGCAAACAATGACATAGGAGCAGTCTCGTGTTTGAGCGAATGTCGCAATCCCTCATACTCCCTTTATATAAATTGTGGTGGAAAGCAAGAACAAGTCAATGGAGAAAGTTATGATGATGATTCAGATTCACCTGGACCAGCTAAACTCCATGTCAGTCCAACAGGAAAATGGGCATTTAGCACCACTGACGATCAAACGTATGCTAGTCTTGGAAGACGTGTATTTGATATCTACCTACAGGGAAAGCCGGTGCAAAAGGACTTTAATATTGCAAAAGAAGCAGGAGGAGTTGGTAAGGAAGTCATAAAACAGTTCAAAAATATTTTTGTTAACAGTAGTACCTTGGAGATCCGTTTGTATTGGGCTGGAAAAGGGACACAGTTTCTCCCAAATAGATCAGTATACGGTCCTCTTATATCAGCTATATCAGTGGAATCTGACTCTCCACCTGGAAGCCTATCTGCAAGAGCTGTGGTTGGAATTGTGGTTGCAGCAGCAGTTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAAAACATTAGCAAGAGAGCTGAGGAGTTTGGACGTTCAAACGGGTTTATTTACCTTAAGACAAATCAAAGCAGCTACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCCGTGTATAAGGGATGTTTACCCAATGGGACATTGATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTCTTAAATGAAATAGGCATGATATCTGCTTTGCAACATCCTTATCTTGTTAAACTCCATGGTTGTTGTGTGGAGGGAGATCAATTGTTGCTGATATATGAATACCTGGAAAACAATAGTCTAGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATTAAATTAGATTGGCCAACTAGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTAGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACCAATGTATTGCTTGATACAAATCTTGACCCAAAGATATCTGATTTTGGTTTGGCAAAGCTTGACGAGGAGGACAATACTCACATTAGTACGAGAATTGCTGGTACCTATGGATATATGGCTCCGGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGCCTTGGAAATCGTTAGTGGAAAGAGCAACACCATGTTTCGATCAAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAGGGGTGACCTATTGGAGCTAGTTGATAGAAGATTAGGTTTAGATTTCAACAAAAAGGAAGCTATGGTGGTAATCAACGTGGCTCTCCTATGCACCAATGTCACTTCAAACCTTAGACCCTCCATGTCGTTGGTGGTAAGTTTTCTTGAAGGAAGGACTGTGGTACCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTATCAGATGGAAGAAAATAATTTAAGTACCACCTCACAAAGTCAGAGTATATTAAATGACGGGCCATGGACTGCCACATCTTCATCAGCTGTAGACCTTTATCCTGTTCACCTTGATTCTTCCTATTGGGAGGAAAGAAATTAA 2823 0.395 MTTTSPYSSLSLIAIFFLSLTAFGANTIHPDEKEALKDIAKSLGKKDWNFDIDPCSNKPNWVTTPIPKVLENNVTCDCSVAGDNFCHVVSVILKGQNLPGTLPPELTRLRYLQNIDLSRNYLNGTIPKQWGSMMSISKIALLGNRLTGSIPAEIANISTLQILELWNNQMSGNLPPELGNLTQIQTLRFSFNNFSGELPATLAKLTTLQDFQISDNQFSGQIPDFIQNWRNINTLIIQGSGLSGPIPSKISLLRNLIDLRISDLNGSEYAPLPQLNNMTSLSKLILRNCNINGALPDLGTMKTLKYLDFSFNKFSGTIPNAYADINSVEFICLTGNLLTGLMPSWKKDIFVDLSYNNFSINQEIQICPSDKLNLFSNSWANNDIGAVSCLSECRNPSYSLYINCGGKQEQVNGESYDDDSDSPGPAKLHVSPTGKWAFSTTDDQTYASLGRRVFDIYLQGKPVQKDFNIAKEAGGVGKEVIKQFKNIFVNSSTLEIRLYWAGKGTQFLPNRSVYGPLISAISVESDSPPGSLSARAVVGIVVAAAVIIILVFGILWWKGCFGKKKTLARELRSLDVQTGLFTLRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLHGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWPTRQKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDTNLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTMFRSKEEAFYLLDWAHLLKERGDLLELVDRRLGLDFNKKEAMVVINVALLCTNVTSNLRPSMSLVVSFLEGRTVVPEFVSDSSEVMDEKKLEVMRQYYYQMEENNLSTTSQSQSILNDGPWTATSSSAVDLYPVHLDSSYWEERN 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03389 940 SUPERFAMILY Protein kinase-like (PK-like) 576 884 IPR011009 -
Vifa1g03389 940 ProSiteProfiles Protein kinase domain profile. 593 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03389 940 SMART serkin_6 593 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03389 940 CDD STKc_IRAK 599 866 - -
Vifa1g03389 940 Pfam Protein tyrosine and serine/threonine kinase 595 863 IPR001245 GO:0004672|GO:0006468
Vifa1g03389 940 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672|GO:0006468
Vifa1g03389 940 SUPERFAMILY L domain-like 51 376 - -
Vifa1g03389 940 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 29 265 - -
Vifa1g03389 940 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 904 - -
Vifa1g03389 940 Gene3D Phosphorylase Kinase; domain 1 561 668 - -
Vifa1g03389 940 Gene3D - 437 526 - -
Vifa1g03389 940 Gene3D Ribonuclease Inhibitor 31 196 IPR032675 -
Vifa1g03389 940 Gene3D Transferase(Phosphotransferase) domain 1 669 877 - -
Vifa1g03389 940 Pfam Malectin domain 447 521 IPR021720 -
Vifa1g03389 940 Gene3D Ribonuclease Inhibitor 297 370 IPR032675 -
Vifa1g03389 940 FunFam Putative LRR receptor-like serine/threonine-protein kinase 669 876 - -
Vifa1g03389 940 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 562 668 - -
Vifa1g03389 940 Gene3D Ribonuclease Inhibitor 197 296 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03389 Vifa-Chr1 529377154 529386242 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03389 27 904 Receptor kinase-like Gene Family AT1G53420 51.366 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03389 PK_Tyr_Ser-Thr 7.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03389 - - cam:101501658 1112.06