Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03386 ATGAACACTTCCTCTCAGTTTTTCTTCCTTTCACTCATTGCCGTATGGCTCATATCTCTAACAGCTTTTGGAGCTACTACAGTTCACCCGGACGAAAAGAAAGCTCTTGAAGATATAGCTATATCACTTGGTAAGAAGGACTGGAACTTCGACATAGATCCATGCAGCAACGAACCTAACTGGTTTACGCCTCCCATACCCAAAATCTTAGAGAACAATGTTACCTGTAATTGCTCTGTCCCTGGTGAGAACTTCTGTCATGTTACTATAATAAGTTTGAAAGGGCAAAATCTTCAAGGCACTCTCCCACGAGAACTGAACAGGTTGCAATACCTTCAAACTATTGACCTCTCTCGCAATTACTTGAACGGTACAATTCCTAAAGAATGGGGCTCCATGACGAATCTTCTTAACATTAATCTCCTTGGAAATCGGTTAACGGGTTCAATACCAAAGGAGATTGCAAATATATCAACCCTGATTCAGTTGGAGTTAACGGCCAATCAAATGTCTGGAAATATTACTTCTGAGCTTGGGAATCTACCTCAGATTCGAACACTGCGATTTTCTTCTAACAATTTTTCTGGAGAGCTACCTGCGACATTGGCCAAGCTCACTACATTGCAAGATTTCCAAATTTCCGACAACCTATTCTCGGGAAAGATACCCGATTTTATTCAAAACTGGACTAATATCAATACGCTAATCATTCAAGGGAGTGGATTAAGTGGACCAATTCCTTCCAAAATTTCACTTTTGAGAAACTTAACTGACTTGAGAATTAGTGATTTAAATGGATCTGAATATGCATCTTTACCACAAGTTAATAATATGACATCGTTAAGCAAACTGGTTCTAAGGAATTGCAACATCAATGGAACACTACCTGATCTCAGGACTATGACATCATTAAAATACTTAGACTTCAGCTTTAACAAATTAAGTGGAACAATTCCAAGTACCTATGCCGACATAAACAATATTATGAACTTCATATTTTTAACTGGAAACCTTCTCACTGGACCGATACCTCTTTGGAAAACGAACCTCTACGTAGATCTTTCATACAATAACTTCAGCATCAGCCAAGGGAATCAGATATGTCAAAATGATAAAGTAAACTTGTTTTCTACCTCATGGTCAAACAATAACATAGGAACAGTTTCATGTTTGAGGGAATGTACCAAACCCTCCTACTCCCTTTATATAAATTGTGGCGGACAGCAAGAAACAGTTAACAAAAAAAGTTATAATGGGGATTCAGATTCACCTGGACCAGCTAAATTCCATGTCAGTCCAACAGGAAATTGGGCATTTAGCACCACTGGTATATTCATTGATGGAGACCAACTCGGAGAAACTTATTCCCCGCAAAATGTTACTACACTTACTATGGCAGATGCTGATTTGTACATGAATGCACGTGGTTCTGCCATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAATGGAAGCTACACAGTAAATCTACATTTTGCTGAAATAATGTTCAGAGACGACCAAACTTATGGTAGTCTTGGAAGACGTGTATTTGATATCTACCTTCAGGGAAAGCCAGTGCAAAAGGACTTCAATATTGCCAAAGAAGCAGGAGGAGTTGGTAAGGAAGTCATAAAACCGTTCAAAGATGTTGTTGTTACAAGTAATACCTTGGAGATCCGTTTGTATTGGGCTGGAAAAGGAACACAGTCTCTCCCAAATAGATCAGTATTTGGTCCTCTTATATCTGCCATATCAGTGGAATCTGACTCTCCGCCTGGAAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGTTGCAGCAACAGTTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAAAAAAACTCATTAGAAAGAGACTTGAAGAGTTTAGACGTTCGAACGGGTATATTTACCTTACGACAAATCAAAGCAGCCACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGCGGATTTGGTCCTGTTTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTCTTAAATGAAATAGGCATGATATCTGCTTTGCAACATCCTTATCTTGTTAAACTCCATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTTTAGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATAAAATTAGATTGGTCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTATTGCTTGATACGAATCTTCACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGTACTAGAATTGCCGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCTTTGGAAGTCGTTAGTGGAAGGAACAACACCCTTCATCGGGCAAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAGGGGTGATCTAATGGAGCTAGTTGATAGAAGATTAGGTTCAAATTTCAACAAAAAGGAAGCTATGGTGATGATCAATGTGGCTCTCCTATGCACAAATGTCACTTCAAACCTTAGACCCTCCATGTCGTCGGTGGTAAGTTTCCTTGAAGGAAGGAACGCGGTACCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTACCAGAAGGAAGAAAATAAGATAAGTAGTACGTCTCAAACACAAAGTCAGAGTTTAATAAGTGATGGGCCATGGACCGCTTCATCTTCATCAGCTGTAGACCTTTATCCTGCCCACCTTGATTCTTCCTATTTGGAGGGAAGAAATTAA 3021 0.3923 MNTSSQFFFLSLIAVWLISLTAFGATTVHPDEKKALEDIAISLGKKDWNFDIDPCSNEPNWFTPPIPKILENNVTCNCSVPGENFCHVTIISLKGQNLQGTLPRELNRLQYLQTIDLSRNYLNGTIPKEWGSMTNLLNINLLGNRLTGSIPKEIANISTLIQLELTANQMSGNITSELGNLPQIRTLRFSSNNFSGELPATLAKLTTLQDFQISDNLFSGKIPDFIQNWTNINTLIIQGSGLSGPIPSKISLLRNLTDLRISDLNGSEYASLPQVNNMTSLSKLVLRNCNINGTLPDLRTMTSLKYLDFSFNKLSGTIPSTYADINNIMNFIFLTGNLLTGPIPLWKTNLYVDLSYNNFSISQGNQICQNDKVNLFSTSWSNNNIGTVSCLRECTKPSYSLYINCGGQQETVNKKSYNGDSDSPGPAKFHVSPTGNWAFSTTGIFIDGDQLGETYSPQNVTTLTMADADLYMNARGSAISLTYYGFCLANGSYTVNLHFAEIMFRDDQTYGSLGRRVFDIYLQGKPVQKDFNIAKEAGGVGKEVIKPFKDVVVTSNTLEIRLYWAGKGTQSLPNRSVFGPLISAISVESDSPPGSISAGAVVGIVVAATVIIILVFGILWWKGCFGKKNSLERDLKSLDVRTGIFTLRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLHGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWSTRQKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDTNLHPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEVVSGRNNTLHRAKEEAFYLLDWAHLLKERGDLMELVDRRLGSNFNKKEAMVMINVALLCTNVTSNLRPSMSSVVSFLEGRNAVPEFVSDSSEVMDEKKLEVMRQYYYQKEENKISSTSQTQSQSLISDGPWTASSSSAVDLYPAHLDSSYLEGRN 1006
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03386 1006 Pfam Malectin domain 400 585 IPR021720 -
Vifa1g03386 1006 Gene3D Phosphorylase Kinase; domain 1 626 732 - -
Vifa1g03386 1006 CDD STKc_IRAK 663 930 - -
Vifa1g03386 1006 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 626 732 - -
Vifa1g03386 1006 Gene3D Ribonuclease Inhibitor 28 267 IPR032675 -
Vifa1g03386 1006 Gene3D Ribonuclease Inhibitor 268 380 IPR032675 -
Vifa1g03386 1006 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 198 - -
Vifa1g03386 1006 SUPERFAMILY L domain-like 54 405 - -
Vifa1g03386 1006 Pfam Protein tyrosine and serine/threonine kinase 659 928 IPR001245 GO:0004672|GO:0006468
Vifa1g03386 1006 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 199 265 - -
Vifa1g03386 1006 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 398 590 - -
Vifa1g03386 1006 SUPERFAMILY Protein kinase-like (PK-like) 640 942 IPR011009 -
Vifa1g03386 1006 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 968 - -
Vifa1g03386 1006 FunFam Putative LRR receptor-like serine/threonine-protein kinase 733 940 - -
Vifa1g03386 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Vifa1g03386 1006 Gene3D Transferase(Phosphotransferase) domain 1 733 942 - -
Vifa1g03386 1006 ProSiteProfiles Protein kinase domain profile. 657 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03386 1006 Gene3D - 398 590 - -
Vifa1g03386 1006 SMART serkin_6 657 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa1g03386 Vifa-Chr1 528363459 528373024 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03386 25 957 Receptor kinase-like Gene Family AT1G53420 54.805 0.0 987
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03386 PK_Tyr_Ser-Thr 2.7e-46 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03386 - - gmx:732563 1313.13