LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g03385	ATGAACACTTCCTCTCAGTTTTTCTTCCTTTCACTCATTGCCGTATGGCTCATATCTCTAACAGCTTTTGGAGCTACTACAGTTCACCCGGACGAAAAGAAAGCTCTTGAAGATATAGCTATATCACTTGGTAAGAAGGACTGGAACTTCGACATAGATCCATGCAGCAACGAACCTAACTGGTTTACGCCTCCCATACCCAAAATCTTAGAGAACAATGTTACCTGTAATTGCTCTGTCCCTGGTGAGAACTTCTGTCATGTTACTATAATAAGTTTGAAAGGGCAAAATCTTCAAGGCACTCTCCCACGAGAACTGAACAGGTTGCAATACCTTCAAACTATTGACCTCTCTCGCAATTACTTGAACGGTACAATTCCTAAAGAATGGGGCTCCATGACGAATCTTCTTAACATTAATCTCCTTGGAAATCGGTTAACGGGTTCAATACCAAAGGAGATTGCAAATATATCAACCCTGATTCAGTTGGAGTTAACGGCCAATCAAATGTCTGGAAATATTACTTCTGAGCTTGGGAATCTACCTCAGATTCGAACACTGCGATTTTCTTCTAACAATTTTTCTGGAGAGCTACCTGCGACATTGGCCAAGCTCACTACATTGCAAGATTTCCAAATTTCCGACAACCTATTCTCGGGAAAGATACCCGATTTTATTCAAAACTGGACTAATATCAATACGCTAATCATTCAAGGGAGTGGATTAAGTGGACCAATTCCTTCCAAAATTTCACTTTTGAGAAACTTAACTGACTTGAGAATTAGTGATTTAAATGGATCTGAATATGCATCTTTACCACAAGTTAATAATATGACATCGTTAAGCAAACTGGTTCTAAGGAATTGCAACATCAATGGAACACTACCTGATCTCAGGACTATGACATCATTAAAATACTTAGACTTCAGCTTTAACAAATTAAGTGGAACAATTCCAAGTACCTATGCCGACATAAACAATATTATGAACTTCATATTTTTAACTGGAAACCTTCTCACTGGACCGATACCTCTTTGGAAAACGAACCTCTACGTAGATCTTTCATACAATAACTTCAGCATCAGCCAAGGGAATCAGATATGTCAAAATGATAAAGTAAACTTGTTTTCTACCTCATGGTCAAACAATAACATAGGAACAGTTTCATGTTTGAGGGAATGTACCAAACCCTCCTACTCCCTTTATATAAATTGTGGCGGACAGCAAGAAACAGTTAACAAAAAAAGTTATAATGGGGATTCAGATTCACCTGGACCAGCTAAATTCCATGTCAGTCCAACAGGAAATTGGGCATTTAGCACCACTGGTATATTCATTGATGGAGACCAACTCGGAGAAACTTATTCCCCGCAAAATGTTACTACACTTACTATGGCAGATGCTGATTTGTACATGAATGCACGTGGTTCTGCCATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAATGGAAGCTACACAGTAAATCTACATTTTGCTGAAATAATGTTCAGAGACGACCAAACTTATGGTAGTCTTGGAAGACGTGTATTTGATATCTACCTTCAGGGAAAGCCAGTGCAAAAGGACTTCAATATTGCCAAAGAAGCAGGAGGAGTTGGTAAGGAAGTCATAAAACCGTTCAAAGATGTTGTTGTTACAAGTAATACCTTGGAGATCCGTTTGTATTGGGCTGGAAAAGGAACACAGTCTCTCCCAAATAGATCAGTATTTGGTCCTCTTATATCTGCCATATCAGTGGAATCTGCAGACTCTCCGCCTGGAAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGTTGCAGCAACAGTTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAAAAAAACTCATTAGAAAGAGACTTGAAGAGTTTAGACGTTCGAACGGGTATATTTACCTTACGACAAATCAAAGCAGCCACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGCGGATTTGGTCCTGTTTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTCTTAAATGAAATAGGCATGATATCTGCTTTGCAACATCCTTATCTTGTTAAACTCCATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTTTAGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATAAAATTAGATTGGTCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTATTGCTTGATACGAATCTTCACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGTACTAGAATTGCCGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCTTTGGAAGTCGTTAGTGGAAGGAACAACACCCTTCATCGGGCAAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAGGGGTGATCTAATGGAGCTAGTTGATAGAAGATTAGGTTCAAATTTCAACAAAAAGGAAGCTATGGTGATGATCAATGTGGCTCTCCTATGCACAAATGTCACTTCAAACCTTAGACCCTCCATGTCGTCGGTGGTAAGTTTCCTTGAAGGAAGGAACGCGGTACCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTACCAGAAGGAAGAAAATAAGATAAGTAGTACGTCTCAAACACAAAGTCAGAGTTTAATAAGTGATGGGCCATGGACCGCTTCATCTTCATCAGCTGTAGACCTTTATCCTGCCCACCTTGATTCTTCCTATTTGGAGGGAAGAAATTAA	3024	0.3925	MNTSSQFFFLSLIAVWLISLTAFGATTVHPDEKKALEDIAISLGKKDWNFDIDPCSNEPNWFTPPIPKILENNVTCNCSVPGENFCHVTIISLKGQNLQGTLPRELNRLQYLQTIDLSRNYLNGTIPKEWGSMTNLLNINLLGNRLTGSIPKEIANISTLIQLELTANQMSGNITSELGNLPQIRTLRFSSNNFSGELPATLAKLTTLQDFQISDNLFSGKIPDFIQNWTNINTLIIQGSGLSGPIPSKISLLRNLTDLRISDLNGSEYASLPQVNNMTSLSKLVLRNCNINGTLPDLRTMTSLKYLDFSFNKLSGTIPSTYADINNIMNFIFLTGNLLTGPIPLWKTNLYVDLSYNNFSISQGNQICQNDKVNLFSTSWSNNNIGTVSCLRECTKPSYSLYINCGGQQETVNKKSYNGDSDSPGPAKFHVSPTGNWAFSTTGIFIDGDQLGETYSPQNVTTLTMADADLYMNARGSAISLTYYGFCLANGSYTVNLHFAEIMFRDDQTYGSLGRRVFDIYLQGKPVQKDFNIAKEAGGVGKEVIKPFKDVVVTSNTLEIRLYWAGKGTQSLPNRSVFGPLISAISVESADSPPGSISAGAVVGIVVAATVIIILVFGILWWKGCFGKKNSLERDLKSLDVRTGIFTLRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLHGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWSTRQKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDTNLHPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEVVSGRNNTLHRAKEEAFYLLDWAHLLKERGDLMELVDRRLGSNFNKKEAMVMINVALLCTNVTSNLRPSMSSVVSFLEGRNAVPEFVSDSSEVMDEKKLEVMRQYYYQKEENKISSTSQTQSQSLISDGPWTASSSSAVDLYPAHLDSSYLEGRN	1007

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g03385	1007	Pfam	Malectin domain	400	585	IPR021720	-
	Vifa1g03385	1007	SMART	serkin_6	658	929	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g03385	1007	Gene3D	Transferase(Phosphotransferase) domain 1	734	943	-	-
	Vifa1g03385	1007	Pfam	Protein tyrosine and serine/threonine kinase	660	929	IPR001245	GO:0004672\|GO:0006468
	Vifa1g03385	1007	Gene3D	Ribonuclease Inhibitor	28	267	IPR032675	-
	Vifa1g03385	1007	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	398	590	-	-
	Vifa1g03385	1007	Gene3D	Ribonuclease Inhibitor	268	380	IPR032675	-
	Vifa1g03385	1007	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	780	792	IPR008271	GO:0004672\|GO:0006468
	Vifa1g03385	1007	FunFam	Probable LRR receptor-like serine/threonine-protein kinase RFK1	34	198	-	-
	Vifa1g03385	1007	SUPERFAMILY	L domain-like	54	405	-	-
	Vifa1g03385	1007	ProSiteProfiles	Protein kinase domain profile.	658	978	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g03385	1007	Gene3D	-	398	591	-	-
	Vifa1g03385	1007	FunFam	Putative LRR receptor-like serine/threonine-protein kinase isoform A	199	265	-	-
	Vifa1g03385	1007	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	734	941	-	-
	Vifa1g03385	1007	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	17	969	-	-
	Vifa1g03385	1007	SUPERFAMILY	Protein kinase-like (PK-like)	641	943	IPR011009	-
	Vifa1g03385	1007	Gene3D	Phosphorylase Kinase; domain 1	627	733	-	-
	Vifa1g03385	1007	CDD	STKc_IRAK	664	931	-	-
	Vifa1g03385	1007	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	627	733	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g03385	Vifa-Chr1	528363459	528373024	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g03385	25	958	Receptor kinase-like Gene Family	AT1G53420	54.805	0.0	987

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vifa1g03385		PK_Tyr_Ser-Thr	2.7e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g03385	-		-	gmx:732563	1313.52