Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03384 ATGACAAGATTATTTGATAACCGTGTACAAGGTCCACAAGAACTCCAAATAAGATTAGATTGGTCAACTGGGAAGAAGATCTGTGTTGGCATTGCTAGAGGATTGGCATACCTCCATGAAGAATCAAGATTGAAGGTTGTTCACAGGGACATCAAAGCCACTAGCGTGTTGCTTGATAAAGATCTTGACCCAAAGATATCTGATTTTGGTTTAGCCAAGCTTGATGAAGAGGACAACACTCACATTAGCACTAGAATTGCTAGACCTAACAAAACAGATGTTTATAGTTATGGAATTGTTGTCTTAGAAATCATTAGTGGAAAGAATAACACCCTTTGTCGGTCAAAGGAGGAGGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAGGAGAGGGGTGACCTAATGGAGCTAGTTGATAGAAGATTGGGTTCAGACTTCAACAAAAAGGAAGCTATGATGGAAGAAAATGATATAAGTCAATCACAAACACGAAATCAGAGTATATCAATTGATGAGCCATGGACTGCCACATCTTCATCAGCTGTAGACCTTTATCCTGTCCACCTTGATTCTTCCTATTGGGAGGAAAGAAATTAA 600 0.3917 MTRLFDNRVQGPQELQIRLDWSTGKKICVGIARGLAYLHEESRLKVVHRDIKATSVLLDKDLDPKISDFGLAKLDEEDNTHISTRIARPNKTDVYSYGIVVLEIISGKNNTLCRSKEEAFYLLDWAHLLKERGDLMELVDRRLGSDFNKKEAMMEENDISQSQTRNQSISIDEPWTATSSSAVDLYPVHLDSSYWEERN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03384 199 ProSiteProfiles Protein kinase domain profile. 1 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03384 199 Gene3D Transferase(Phosphotransferase) domain 1 4 88 - -
Vifa1g03384 199 FunFam Os07g0541700 protein 2 88 - -
Vifa1g03384 199 SUPERFAMILY Protein kinase-like (PK-like) 19 143 IPR011009 -
Vifa1g03384 199 Pfam Protein kinase domain 20 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03384 199 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 153 - -
Vifa1g03384 199 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 21 30 IPR017972 GO:0005506|GO:0016705
Vifa1g03384 199 Gene3D Transferase(Phosphotransferase) domain 1 89 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03384 Vifa-Chr1 528262054 528263707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03384 11 153 Receptor kinase-like Gene Family AT1G53420 63.924 2.41e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03384 Pkinase 1.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03384 - - cam:101501658 256.144