Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03380 ATGAAGAGACGATTCGCTGATTTAGGTGATGAACCTGAATCTGAGATTGAGTATCAGTCTCTGCTTGTTTCGAATTATCATCTCGAAGATGACGATGACAAACCTGTGTCTTTTTCTGTTTTGCCCATTCAATGGAGTGATTCCGAGGTTTCGAATGTTGATGGCAACAGAGGGAAGATATTCCTGCATGGATCTTCTGATAGTGGATTGCAGAAGATTTTCATGCAGGTTACTGCTTGGAAGTTTGATCTTTCTGGTTTGAAACCTGAGGTGTCCTTGCTATCAAAGGATGGAAGGTGGATTAAGCTTCAGAAGCCGCGAAAAAGCTTTCAGGATACTGTTAAAACTGTTTTAATTACGCTTTACTTTCTTCATTGTGTTAAGAGAAAACCTCGATTGTCTACTGATTCTTTTTGGAGTAACTTGTGTAAGGATAGAGATTTGAGCTCTTATGGGTTTAAACCTTCGCACAAGGATTTACTGGATCATATGCCCTTGATTGGTGAAGCTACCAGAAGACATGTTGTCTTGGCTCGGTCTAAGCTTTTGCTCACAGTTTTAGGGGACAAGCCAGAGTATCAAAAAGTATCTTATGAGGAATTTGAAGATTTGCCACAACCTGGGTTTACAGATGATGATACTGACAATGACATCGTCAAAGAAACTGATGAAGACTCAAAAGTAGAGGATGATTTGTTTGATTCTGTTTGTGCAATGTGTGACAATGGTGGTGATCTTATAATGTGTGATGGAGCATGCATGAGGTCATTTCATGCTACTAAGGCAGATGGTAGGGAATCTATGTGTGATTCTCTTGGTTTTACAAAGAAGCAAGTTGATGATATTGAGACATTTTATTGTAAAAATTGCGAATATCGTCAGCATCAGTGCTTTGCATGTGGCGAGCTGGGTTCTTCTGATAAAGATAAGGGTCCTGAGGTCTTTAAATGTGCTTCTGAAACATGTGACCGTTTCTACCATCCACATTGTGTCGCAAAGTTACTTCCCCCTGAGAAACATATCTCAGAGGGGAAACCCTTTACATGTCCAATTCATTTTTGTTGTGTCTGTAAAGGATTGGAGAATAAGATGGAACATGAGTTGCAATTTGGAGTTTGTAACCGATGTCCAAAGTCATATCATCGCAAATGTTTGCCAATAGGGATTGCTTTTGACATCGATGGTGTTGAAACAAGGGCTTGGGAAGGTCTTTTGCCAAACAATCGCATTCTTATCTATTGCTTAAATCATGAGATCATTGATACACTTGGGACTCCTGTAAGAGATCATGTAAAATTCCCCAAAATTGGAGCTAGTGTTCGGGAAAATAATATTTCTAATAAGAGAATGAAGCCTACAACTAAAGAGAGAGTTATATTGGAGAACAATGTTGGCATTGCTAAATCATCTGGGAAGAGCACTGCAAATCACAAGATCGATGATAAGCTTGAAACCCATGTAAAGGATTATATAAAATTCCCCGTCACTAAAGCTAGTGTTCGGGAAGTTAATACCTCTAATAAGAGGATGAAGCCTACAACTAAAGAGAGAGTTATATTGGAGAACAATGTTGGTTTTGTTAAATCATCTGGGAAGAGCACTGCAAATCATGAGATCAATGAGAAGCTTGGGAATCCTGTAAAAGATCATATAAAACTCCCTGATGCTAAAGCTAGTGTTCCGGAAATTAATACATCTAGTAAGTGGTTCAAACCTACAACTAAAGAGAGAGTTATATTGGAAAACAATGCTGGTTTTGTTAAATCACCGGGGAAGAGCACTGCAGCAGGATCTAAAGTAACTAAGGAGACAGTGTTGTCTTTGATGAACAATGTTGGCTTTGATGAATCATCTGGGAAGAGCACTGCAACAGAATCTAAAGTAACTAAAGAGACAGTTACATTGGAGAACAATAAAGAGACTGTTACATTGGAGAACAATGCTGGCTTTGATAAATCATCTGGGAAGAGCACTGCATCAGGATCTAAAGCAACTAAAGAGAGAGTTGCATTGGAAAACAATGTTGGTTTTAATAAATCATCTGGGAAGAGCACTGCAGCAGGATCTAAAGTAACTAAAAAGACAGCTACATTGGAGAATAATGTTGGCTTTGTTAAATCATCTGGGAAGAGCACTGCAGCAGGATCTAAAGTAACTATAAAAAAGACAGCTACATTGGAGAACAGTGTTGGCTCTGTTAATTCATCTGGGAAGAGCACTGCAGCAGGTTCTAAAGCAACTACAGAGAGAGGTGCATTGGAGAACAGTGTTGACTTGGTTAAATCATCTGGGAAGAGCACTGCAGCAGGATCTAAAGCAACTACAGAGAGAGGTGCATTGGAGAACAATGTTGACTTGGTTAAATCATCTGGGAAGAGCACTGCAGCAGGATCTAAAGCAACTACAGAGAGAGTTGCATTGGATAACAATGTTGACTTGGTTAAATCATCTGGGAAGAGCACTGCAGCAGGATCCAAAGGGACTGGACGTCTGCCTTTAAATAAACCAAAATCAAATGAAACATCCAGAAGAGTTTCGACTGAAAATAAGAACTCAGTCTCAAACCTAATTGACCAGAAATTGAATGCTTCTATGAGTAAAGGTTTTAAACCAAGCCAGCATGACAATCAGGTCGATGATGCAGATAATGGAACACTGTCAATCCAGCCTTTAAGAACTACATTGCCTCCAGCTCCTATGAGTAAAGGTTTAAAACAAAGCAAGCAGCTTGATGATGCAGATAATCAAACCTCGTCAATCAAGCCTATTAGAAGTGTATTGTCTCCACTGGATGCTGATTCAGAGAAAGGTTTGGTGGATTCATTTAAAGAAGCCAGATCCTCAATATTGTTGGAGGGTGTGGTAGGAAAGCAAAAATTGGGAGATGTTGAGGACAAGCTGGTGCTGAATCATGATCTCCCAGAGTCAACTGATATTCAAGAAGAACAAGCATGTATAAATGAAAGTGAGAAAAGAAGCTTACGGCATGGTAGTCTTGAAGAGGAGAGTGATAAGAAACAGGAGTTTAAGATTATCCCGACTTGGAAGACGTCTGCGAAGAGAACACAAGTTAAGAAAAATGATAGAAGAGAACTGGGTGTGTCATCACAATTGTTTAAAGAAAAAGGTGCGGTCTCAAAAGCCAAAACCAAAACACGGCCTGTAAAAGAAGTGTCTAGCCATAAGCGGAAAACTCGTAGTGAGACTAAAAGTTTCCAGACTCCTGATCGAGTTGTGCCGGCAGGTTTTGCAGCTGGTCCTAACTATGAATATTCACTCCACCATTCAGCAGGGTGGCTTGATGAGTAG 3309 0.3983 MKRRFADLGDEPESEIEYQSLLVSNYHLEDDDDKPVSFSVLPIQWSDSEVSNVDGNRGKIFLHGSSDSGLQKIFMQVTAWKFDLSGLKPEVSLLSKDGRWIKLQKPRKSFQDTVKTVLITLYFLHCVKRKPRLSTDSFWSNLCKDRDLSSYGFKPSHKDLLDHMPLIGEATRRHVVLARSKLLLTVLGDKPEYQKVSYEEFEDLPQPGFTDDDTDNDIVKETDEDSKVEDDLFDSVCAMCDNGGDLIMCDGACMRSFHATKADGRESMCDSLGFTKKQVDDIETFYCKNCEYRQHQCFACGELGSSDKDKGPEVFKCASETCDRFYHPHCVAKLLPPEKHISEGKPFTCPIHFCCVCKGLENKMEHELQFGVCNRCPKSYHRKCLPIGIAFDIDGVETRAWEGLLPNNRILIYCLNHEIIDTLGTPVRDHVKFPKIGASVRENNISNKRMKPTTKERVILENNVGIAKSSGKSTANHKIDDKLETHVKDYIKFPVTKASVREVNTSNKRMKPTTKERVILENNVGFVKSSGKSTANHEINEKLGNPVKDHIKLPDAKASVPEINTSSKWFKPTTKERVILENNAGFVKSPGKSTAAGSKVTKETVLSLMNNVGFDESSGKSTATESKVTKETVTLENNKETVTLENNAGFDKSSGKSTASGSKATKERVALENNVGFNKSSGKSTAAGSKVTKKTATLENNVGFVKSSGKSTAAGSKVTIKKTATLENSVGSVNSSGKSTAAGSKATTERGALENSVDLVKSSGKSTAAGSKATTERGALENNVDLVKSSGKSTAAGSKATTERVALDNNVDLVKSSGKSTAAGSKGTGRLPLNKPKSNETSRRVSTENKNSVSNLIDQKLNASMSKGFKPSQHDNQVDDADNGTLSIQPLRTTLPPAPMSKGLKQSKQLDDADNQTSSIKPIRSVLSPLDADSEKGLVDSFKEARSSILLEGVVGKQKLGDVEDKLVLNHDLPESTDIQEEQACINESEKRSLRHGSLEEESDKKQEFKIIPTWKTSAKRTQVKKNDRRELGVSSQLFKEKGAVSKAKTKTRPVKEVSSHKRKTRSETKSFQTPDRVVPAGFAAGPNYEYSLHHSAGWLDE 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03380 1102 MobiDBLite consensus disorder prediction 1044 1071 - -
Vifa1g03380 1102 MobiDBLite consensus disorder prediction 1043 1084 - -
Vifa1g03380 1102 Pfam Cytosine specific DNA methyltransferase replication foci domain 22 136 IPR022702 -
Vifa1g03380 1102 CDD PHD_SF 353 387 - -
Vifa1g03380 1102 MobiDBLite consensus disorder prediction 643 664 - -
Vifa1g03380 1102 MobiDBLite consensus disorder prediction 816 922 - -
Vifa1g03380 1102 CDD PHD2_NSD 296 352 - -
Vifa1g03380 1102 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 22 451 - -
Vifa1g03380 1102 MobiDBLite consensus disorder prediction 729 801 - -
Vifa1g03380 1102 MobiDBLite consensus disorder prediction 832 894 - -
Vifa1g03380 1102 MobiDBLite consensus disorder prediction 643 667 - -
Vifa1g03380 1102 MobiDBLite consensus disorder prediction 759 778 - -
Vifa1g03380 1102 MobiDBLite consensus disorder prediction 786 801 - -
Vifa1g03380 1102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 293 IPR013083 -
Vifa1g03380 1102 MobiDBLite consensus disorder prediction 729 751 - -
Vifa1g03380 1102 SMART PHD_3 354 418 IPR001965 -
Vifa1g03380 1102 SMART PHD_3 296 353 IPR001965 -
Vifa1g03380 1102 SMART PHD_3 236 291 IPR001965 -
Vifa1g03380 1102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 374 IPR013083 -
Vifa1g03380 1102 SUPERFAMILY FYVE/PHD zinc finger 220 294 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03380 Vifa-Chr1 527791742 527798426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03380 229 341 PHD Transcription Factor Family AT3G14980 30.508 9.69e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03380 - - psat:127117636 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03380 1 527791742 527798426 Vifa1g03380 1 527791742 527798426 ECH
Vifa1g03380 1 527791742 527798426 Vifa1g03380 1 527791742 527798426 PCT