LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g03379	ATGAGGACTTTCTCTCAGTTTCTCTTCCTTTCACTCATTGCCATATGTTTCATATCTCTAAGTCTAACAGCTTTTGGTGCTGATACTATTCACCCTCGCGAAAAGGAAGCTCTTCAAGATATAGCTAAATCACTTGGGAAGAAGGATTGGAACTTTGATATTGATCCCTGCAGCAACAAACCTAACTGGGTTACCCCTCCCATATCCAAATTCGTAGAAAATAGCGTCACCTGTGACTGCTCTGTTGCTGATGACAACTTCTGCCATGTTGTTTCAGTAACTATGAAAGGGCAAAATCTGCTTGGCACTCTCCCACGAGAACTGACCGGGTTGCATTACCTTCAAACTATTGACCTCTCTCGCAATTACTTGAATGGCACAATTCCAAAAGAATGGGGCTCCATGATGAATATTAGAAAAATTGCCCTCCCCGAAAATCGTTTATCAGGTTCAATACCAGCTGAGATTGCAAACATATCTACTCTCCAAATTTTGGAGTTATGGAACAATCAGTTGTCTGGAAATCTTCCTCCTGAGCTTGGGAATCTAACCCAAATTCTAACACTGCGAATTTCCTCTAACAATTTTATTGGAGAACTACCTGGGACATTGACCAAGCTCACTACATTGCAAGATTTCCGAATTGAGGACAACCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGATAAATATCAATACACTAGTGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCTCTTTTAAGAAACTTAACTGACTTGAGAATTAGTGATTTGAATGGATTTGAGTATGCACCTTTGCCAGAACTTAATAAAATGACTTCGTTAAAAACTCTGATTCTGAGGAACTGCAACATCAATGGAAAATTATATGAGTATCTTGGGACTATTGCATCTTTAAAAATATTGGACCTCAGTTTTAACAAATTAAGTGGAACAATTCCGAGTACCTATGCTGCGATGAACAGTTCGAATTACATATTTCTTACTGGAAACCTTCTCACTGGACTAGTGCCTCCTACATGGAGAAAGAATACCTACGTAGATCTTTCATACAATAACTTCAGCATCAGCCAGGGGAGTCAGATATGTCGAGATGACAGTGTGAACTTGTTTTCTACCTCATGGGCACACAATGACCTAGGAACAGTTTCGTGTTTGAGCCTTAAATGTCCTAAACCCTCCAACTCCCTTTATATAAATTGTGGTGGAAATCAAGCAATAGTCAACCGAGCAACTTATGACGGTGATTCAGATTCATATGGACCAGCTAGATTCCATGCCAGTCCAACAGGAAATTGGGCATTTAGCAGCACTGGTGTATTCATTGAAAGTGATATACTTGGAAGAACTTTTACCCCACAAAATATCTCTAAACTTACTATGGCAGATGCTGAGTTGTACATGAATGCGCGTATTTCACCTATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAGTGGAAGCTACACAGTAAATCTGCATTTTGCTGAAATAATGTTCACAGACGATCAAACTTATGGTAGTCTTGGAAGACGCGTATTTGATATTTATATTCAGGGAAAGCAGATGCAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGTAAGAAAATCATTAAACATGGAATCTGGTGGGTTATACTATACTCTCCACCTGGAAGCATATCTGCAGGAGTTGTGGTTGGAATTGTGGTTGCAACAACAGTTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAACTCATTAGCAAGAGAGTTGGAGAGTTTAGACATTCAAACAGGTTTATTTACCTTAAGACAAATCAATGCAGCTACAAATCATTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCCGTGTACAAGGGATGCTTACCAAATGGGACACTGATAGCAGTAAAGCAACTTTCTTCTAAATCAAGGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATCATTTCTGCTTTGCAACACCCTAATCTTGTTAAACTCTGCGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTTATATATGAATACTTGGAAAACAATAGTTTAGCACGTGCTTTATTTGGTCCAGAAGAACACCAAATAAGATTAGATTGGTCAACAAGGAAAAAGATCTATGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGATTGAAGGTTGTTCACAGGGACATCAAAGCCACTAATGTGTTGCTTGATAAAGATCTTAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGTACTAGAATTGCTGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAGGCTGACGTTTATAGTTATGGAATTGTGGCCTTGGAAATTGTTAGTGGAAGGAGCAACACCCTTTATCAGTCAAAGGAGGAACCATTCTATCTTCTTGATTGGGCACATTTATTGAAGGAGAGGGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGTTCTGATTTCAACAAAAAGGAAGCTATGGTGGTAATCAATGTGGCTCTCCTATGCACCAATGTCACTTCAAATCTTAGGCCCGCCATGTCGTCAGTTGTAAGTTTCCTTGAAGGGAGGGCTGTGGTACCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTATCAGAAGGAAGAAAATAAGATAAGTAGTACGCCACAAACACAAAGTCAGTGCTTAATAAGTGATGGGCCATGGACTGCCACATCTTCATCAGCTGTAGACCTTTATCCTGTCCACCTTGATTCTTCCTATTGGGAAGAAAGAAATTAA	2928	0.3928	MRTFSQFLFLSLIAICFISLSLTAFGADTIHPREKEALQDIAKSLGKKDWNFDIDPCSNKPNWVTPPISKFVENSVTCDCSVADDNFCHVVSVTMKGQNLLGTLPRELTGLHYLQTIDLSRNYLNGTIPKEWGSMMNIRKIALPENRLSGSIPAEIANISTLQILELWNNQLSGNLPPELGNLTQILTLRISSNNFIGELPGTLTKLTTLQDFRIEDNQFSGKIPDYIQNWININTLVIQGSGLSGPIPSGISLLRNLTDLRISDLNGFEYAPLPELNKMTSLKTLILRNCNINGKLYEYLGTIASLKILDLSFNKLSGTIPSTYAAMNSSNYIFLTGNLLTGLVPPTWRKNTYVDLSYNNFSISQGSQICRDDSVNLFSTSWAHNDLGTVSCLSLKCPKPSNSLYINCGGNQAIVNRATYDGDSDSYGPARFHASPTGNWAFSSTGVFIESDILGRTFTPQNISKLTMADAELYMNARISPISLTYYGFCLASGSYTVNLHFAEIMFTDDQTYGSLGRRVFDIYIQGKQMQKDFNIAEEAGGVGKKIIKHGIWWVILYSPPGSISAGVVVGIVVATTVIIILVFGILWWKGCFGKKNSLARELESLDIQTGLFTLRQINAATNHFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSRQGNREFLNEIGIISALQHPNLVKLCGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIRLDWSTRKKIYVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSYGIVALEIVSGRSNTLYQSKEEPFYLLDWAHLLKERGDLMELVDRRLGSDFNKKEAMVVINVALLCTNVTSNLRPAMSSVVSFLEGRAVVPEFVSDSSEVMDEKKLEVMRQYYYQKEENKISSTPQTQSQCLISDGPWTATSSSAVDLYPVHLDSSYWEERN	975

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g03379	975	FunFam	Probable LRR receptor-like serine/threonine-protein kinase RFK1	36	200	-	-
	Vifa1g03379	975	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	748	760	IPR008271	GO:0004672\|GO:0006468
	Vifa1g03379	975	Gene3D	Transferase(Phosphotransferase) domain 1	702	910	-	-
	Vifa1g03379	975	FunFam	Putative LRR receptor-like serine/threonine-protein kinase isoform A	201	267	-	-
	Vifa1g03379	975	Gene3D	-	403	553	-	-
	Vifa1g03379	975	Gene3D	Ribonuclease Inhibitor	30	269	IPR032675	-
	Vifa1g03379	975	Pfam	Protein kinase domain	628	827	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g03379	975	Pfam	Malectin domain	405	549	IPR021720	-
	Vifa1g03379	975	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	702	909	-	-
	Vifa1g03379	975	SUPERFAMILY	L domain-like	85	362	-	-
	Vifa1g03379	975	SUPERFAMILY	Protein kinase-like (PK-like)	609	911	IPR011009	-
	Vifa1g03379	975	Gene3D	Ribonuclease Inhibitor	270	382	IPR032675	-
	Vifa1g03379	975	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	595	701	-	-
	Vifa1g03379	975	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	14	930	-	-
	Vifa1g03379	975	Gene3D	Phosphorylase Kinase; domain 1	594	701	-	-
	Vifa1g03379	975	SMART	serkin_6	626	897	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g03379	975	ProSiteProfiles	Protein kinase domain profile.	626	907	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g03379	975	CDD	STKc_IRAK	632	899	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g03379	Vifa-Chr1	527631914	527640258	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g03379	29	926	Receptor kinase-like Gene Family	AT1G53420	51.954	0.0	909

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vifa1g03379		Pkinase	1.3e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g03379	-		-	gmx:732563	1211.82