Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03378 ATGAGGACTTTCTCTCAGTTTCTCTTCCTTTCACTCATTGCCATATGTTTCATATCTCTAAGTCTAACAGCTTTTGGTGCTGATACTATTCACCCTCGCGAAAAGGAAGCTCTTCAAGATATAGCTAAATCACTTGGGAAGAAGGATTGGAACTTTGATATTGATCCCTGCAGCAACAAACCTAACTGGGTTACCCCTCCCATATCCAAATTCGTAGAAAATAGCGTCACCTGTGACTGCTCTGTTGCTGATGACAACTTCTGCCATGTTGTTTCAGTAACTATGAAAGGGCAAAATCTGCTTGGCACTCTCCCACGAGAACTGACCGGGTTGCATTACCTTCAAACTATTGACCTCTCTCGCAATTACTTGAATGGCACAATTCCAAAAGAATGGGGCTCCATGATGAATATTAGAAAAATTGCCCTCCCCGAAAATCGTTTATCAGGTTCAATACCAGCTGAGATTGCAAACATATCTACTCTCCAAATTTTGGAGTTATGGAACAATCAGTTGTCTGGAAATCTTCCTCCTGAGCTTGGGAATCTAACCCAAATTCTAACACTGCGAATTTCCTCTAACAATTTTATTGGAGAACTACCTGGGACATTGACCAAGCTCACTACATTGCAAGATTTCCGAATTGAGGACAACCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGATAAATATCAATACACTAGTGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCTCTTTTAAGAAACTTAACTGACTTGAGAATTAGTGATTTGAATGGATTTGAGTATGCACCTTTGCCAGAACTTAATAAAATGACTTCGTTAAAAACTCTGATTCTGAGGAACTGCAACATCAATGGAAAATTATATGAGTATCTTGGGACTATTGCATCTTTAAAAATATTGGACCTCAGTTTTAACAAATTAAGTGGAACAATTCCGAGTACCTATGCTGCGATGAACAGTTCGAATTACATATTTCTTACTGGAAACCTTCTCACTGGACTAGTGCCTCCTACATGGAGAAAGAATACCTACGTAGATCTTTCATACAATAACTTCAGCATCAGCCAGGGGAGTCAGATATGTCGAGATGACAGTGTGAACTTGTTTTCTACCTCATGGGCACACAATGACCTAGGAACAGTTTCGTGTTTGAGCCTTAAATGTCCTAAACGTGAGTTTCTTCCTGCCTCCAACTCCCTTTATATAAATTGTGGTGGAAATCAAGCAATAGTCAACCGAGCAACTTATGACGGTGATTCAGATTCATATGGACCAGCTAGATTCCATGCCAGTCCAACAGGAAATTGGGCATTTAGCAGCACTGGTGTATTCATTGAAAGTGATATACTTGGAAGAACTTTTACCCCACAAAATATCTCTAAACTTACTATGGCAGATGCTGAGTTGTACATGAATGCGCGTATTTCACCTATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAGTGGAAGCTACACAGTAAATCTGCATTTTGCTGAAATAATGTTCACAGACGATCAAACTTATGGTAGTCTTGGAAGACGCGTATTTGATATTTATATTCAGGGAAAGCAGATGCAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGTAAGAAAATCATTAAACAGTTCAAAGATGTTGTTGTTTCTAGTAATACTTTGGAGATCCGTTTATATTGGGCTGGAAAAGGGACACAGGCTGTCCCAAATAAATCAGTATATGGTCCTCTTATATCGGCTATCTCAGTGGAATCTGACTCTCCACCTGGAAGCATATCTGCAGGAGTTGTGGTTGGAATTGTGGTTGCAACAACAGTTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAACTCATTAGCAAGAGAGTTGGAGAGTTTAGACATTCAAACAGGTTTATTTACCTTAAGACAAATCAATGCAGCTACAAATCATTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCCGTGTACAAGGGATGCTTACCAAATGGGACACTGATAGCAGTAAAGCAACTTTCTTCTAAATCAAGGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATCATTTCTGCTTTGCAACACCCTAATCTTGTTAAACTCTGCGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTTATATATGAATACTTGGAAAACAATAGTTTAGCACGTGCTTTATTTGGTCCAGAAGAACACCAAATAAGATTAGATTGGTCAACAAGGAAAAAGATCTATGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGATTGAAGGTTGTTCACAGGGACATCAAAGCCACTAATGTGTTGCTTGATAAAGATCTTAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGTACTAGAATTGCTGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAGGCTGACGTTTATAGTTATGGAATTGTGGCCTTGGAAATTGTTAGTGGAAGGAGCAACACCCTTTATCAGTCAAAGGAGGAACCATTCTATCTTCTTGATTGGGCACATTTATTGAAGGAGAGGGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGTTCTGATTTCAACAAAAAGGAAGCTATGGTGGTAATCAATGTGGCTCTCCTATGCACCAATGTCACTTCAAATCTTAGGCCCGCCATGTCGTCAGTTGTAAGTTTCCTTGAAGGGAGGGCTGTGGTACCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTATCAGAAGGAAGAAAATAAGATAAGTAGTACGCCACAAACACAAAGTCAGTGCTTAATAAGTGATGGGCCATGGACTGCCACATCTTCATCAGCTGTAGACCTTTATCCTGTCCACCTTGATTCTTCCTATTGGGAAGAAAGAAATTAA 3048 0.3934 MRTFSQFLFLSLIAICFISLSLTAFGADTIHPREKEALQDIAKSLGKKDWNFDIDPCSNKPNWVTPPISKFVENSVTCDCSVADDNFCHVVSVTMKGQNLLGTLPRELTGLHYLQTIDLSRNYLNGTIPKEWGSMMNIRKIALPENRLSGSIPAEIANISTLQILELWNNQLSGNLPPELGNLTQILTLRISSNNFIGELPGTLTKLTTLQDFRIEDNQFSGKIPDYIQNWININTLVIQGSGLSGPIPSGISLLRNLTDLRISDLNGFEYAPLPELNKMTSLKTLILRNCNINGKLYEYLGTIASLKILDLSFNKLSGTIPSTYAAMNSSNYIFLTGNLLTGLVPPTWRKNTYVDLSYNNFSISQGSQICRDDSVNLFSTSWAHNDLGTVSCLSLKCPKREFLPASNSLYINCGGNQAIVNRATYDGDSDSYGPARFHASPTGNWAFSSTGVFIESDILGRTFTPQNISKLTMADAELYMNARISPISLTYYGFCLASGSYTVNLHFAEIMFTDDQTYGSLGRRVFDIYIQGKQMQKDFNIAEEAGGVGKKIIKQFKDVVVSSNTLEIRLYWAGKGTQAVPNKSVYGPLISAISVESDSPPGSISAGVVVGIVVATTVIIILVFGILWWKGCFGKKNSLARELESLDIQTGLFTLRQINAATNHFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSRQGNREFLNEIGIISALQHPNLVKLCGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIRLDWSTRKKIYVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSYGIVALEIVSGRSNTLYQSKEEPFYLLDWAHLLKERGDLMELVDRRLGSDFNKKEAMVVINVALLCTNVTSNLRPAMSSVVSFLEGRAVVPEFVSDSSEVMDEKKLEVMRQYYYQKEENKISSTPQTQSQCLISDGPWTATSSSAVDLYPVHLDSSYWEERN 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03378 1015 SMART serkin_6 666 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03378 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Vifa1g03378 1015 Gene3D - 407 599 - -
Vifa1g03378 1015 Gene3D Phosphorylase Kinase; domain 1 634 741 - -
Vifa1g03378 1015 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 36 200 - -
Vifa1g03378 1015 Pfam Protein kinase domain 668 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03378 1015 CDD STKc_IRAK 672 939 - -
Vifa1g03378 1015 Gene3D Transferase(Phosphotransferase) domain 1 742 950 - -
Vifa1g03378 1015 SUPERFAMILY L domain-like 85 362 - -
Vifa1g03378 1015 Gene3D Ribonuclease Inhibitor 269 378 IPR032675 -
Vifa1g03378 1015 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 635 741 - -
Vifa1g03378 1015 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 407 599 - -
Vifa1g03378 1015 FunFam Putative LRR receptor-like serine/threonine-protein kinase 742 949 - -
Vifa1g03378 1015 Pfam Malectin domain 410 594 IPR021720 -
Vifa1g03378 1015 Gene3D Ribonuclease Inhibitor 30 268 IPR032675 -
Vifa1g03378 1015 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 201 267 - -
Vifa1g03378 1015 ProSiteProfiles Protein kinase domain profile. 666 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03378 1015 SUPERFAMILY Protein kinase-like (PK-like) 649 951 IPR011009 -
Vifa1g03378 1015 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 970 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03378 Vifa-Chr1 527631914 527640258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03378 29 966 Receptor kinase-like Gene Family AT1G53420 54.040 0.0 969
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03378 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03378 - - gmx:732563 1296.57