Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03376 ATGAGGACTTTCTCTCAGTTTCTCTTCCTTTCACTCATTGCCATATGTTTCATATCTCTAAGTCTAACAGCTTTTGGTGCTGATACTATTCACCCTCGCGAAAAGGAAGCTCTTCAAGATATAGCTAAATCACTTGGGAAGAAGGATTGGAACTTTGATATTGATCCCTGCAGCAACAAACCTAACTGGGTTACCCCTCCCATATCCAAATTCGTAGAAAATAGCGTCACCTGTGACTGCTCTGTTGCTGATGACAACTTCTGCCATGTTGTTTCAGTAACTATGAAAGGGCAAAATCTGCTTGGCACTCTCCCACGAGAACTGACCGGGTTGCATTACCTTCAAACTATTGACCTCTCTCGCAATTACTTGAATGGCACAATTCCAAAAGAATGGGGCTCCATGATGAATATTAGAAAAATTGCCCTCCCCGAAAATCGTTTATCAGGTTCAATACCAGCTGAGATTGCAAACATATCTACTCTCCAAATTTTGGAGTTATGGAACAATCAGTTGTCTGGAAATCTTCCTCCTGAGCTTGGGAATCTAACCCAAATTCTAACACTGCGAATTTCCTCTAACAATTTTATTGGAGAACTACCTGGGACATTGACCAAGCTCACTACATTGCAAGATTTCCGAATTGAGGACAACCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGATAAATATCAATACACTAGTGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCTCTTTTAAGAAACTTAACTGACTTGAGAATTAGTGATTTGAATGGATTTGAGTATGCACCTTTGCCAGAACTTAATAAAATGACTTCGTTAAAAACTCTGATTCTGAGGAACTGCAACATCAATGGAAAATTATATGAGTATCTTGGGACTATTGCATCTTTAAAAATATTGGACCTCAGTTTTAACAAATTAAGTGGAACAATTCCGAGTACCTATGCTGCGATGAACAGTTCGAATTACATATTTCTTACTGGAAACCTTCTCACTGGACTAGTGCCTCCTACATGGAGAAAGAATACCTACGTAGATCTTTCATACAATAACTTCAGCATCAGCCAGGGGAGTCAGATATGTCGAGATGACAGTGTGAACTTGTTTTCTACCTCATGGGCACACAATGACCTAGGAACAGTTTCGTGTTTGAGCCTTAAATGTCCTAAACCCTCCAACTCCCTTTATATAAATTGTGGTGGAAATCAAGCAATAGTCAACCGAGCAACTTATGACGGTGATTCAGATTCATATGGACCAGCTAGATTCCATGCCAGTCCAACAGGAAATTGGGCATTTAGCAGCACTGGTGTATTCATTGAAAGTGATATACTTGGAAGAACTTTTACCCCACAAAATATCTCTAAACTTACTATGGCAGATGCTGAGTTGTACATGAATGCGCGTATTTCACCTATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAGTGGAAGCTACACAGTAAATCTGCATTTTGCTGAAATAATGTTCACAGACGATCAAACTTATGGTAGTCTTGGAAGACGCGTATTTGATATTTATATTCAGGGAAAGCAGATGCAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGTAAGAAAATCATTAAACAGTTCAAAGATGTTGTTGTTTCTAGTAATACTTTGGAGATCCGTTTATATTGGGCTGGAAAAGGGACACAGGCTGTCCCAAATAAATCAGTATATGGTCCTCTTATATCGGCTATCTCAGTGGAATCTGCAGACTCTCCACCTGGAAGCATATCTGCAGGAGTTGTGGTTGGAATTGTGGTTGCAACAACAGTTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAACTCATTAGCAAGAGAGTTGGAGAGTTTAGACATTCAAACAGGTTTATTTACCTTAAGACAAATCAATGCAGCTACAAATCATTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCCGTGTACAAGGGATGCTTACCAAATGGGACACTGATAGCAGTAAAGCAACTTTCTTCTAAATCAAGGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATCATTTCTGCTTTGCAACACCCTAATCTTGTTAAACTCTGCGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTTATATATGAATACTTGGAAAACAATAGTTTAGCACGTGCTTTATTTGGTCCAGAAGAACACCAAATAAGATTAGATTGGTCAACAAGGAAAAAGATCTATGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGATTGAAGGTTGTTCACAGGGACATCAAAGCCACTAATGTGTTGCTTGATAAAGATCTTAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGTACTAGAATTGCTGGGACCTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAGGCTGACGTTTATAGTTATGGAATTGTGGCCTTGGAAATTGTTAGTGGAAGGAGCAACACCCTTTATCAGTCAAAGGAGGAACCATTCTATCTTCTTGATTGGGCACATTTATTGAAGGAGAGGGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGTTCTGATTTCAACAAAAAGGAAGCTATGGTGGTAATCAATGTGGCTCTCCTATGCACCAATGTCACTTCAAATCTTAGGCCCGCCATGTCGTCAGTTGTAAGTTTCCTTGAAGGGAGGGCTGTGGTACCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTATCAGAAGGAAGAAAATAAGATAAGTAGTACGCCACAAACACAAAGTCAGTGCTTAATAAGTGATGGGCCATGGACTGCCACATCTTCATCAGCTGTAGACCTTTATCCTGTCCACCTTGATTCTTCCTATTGGGAAGAAAGAAATTAA 3036 0.3933 MRTFSQFLFLSLIAICFISLSLTAFGADTIHPREKEALQDIAKSLGKKDWNFDIDPCSNKPNWVTPPISKFVENSVTCDCSVADDNFCHVVSVTMKGQNLLGTLPRELTGLHYLQTIDLSRNYLNGTIPKEWGSMMNIRKIALPENRLSGSIPAEIANISTLQILELWNNQLSGNLPPELGNLTQILTLRISSNNFIGELPGTLTKLTTLQDFRIEDNQFSGKIPDYIQNWININTLVIQGSGLSGPIPSGISLLRNLTDLRISDLNGFEYAPLPELNKMTSLKTLILRNCNINGKLYEYLGTIASLKILDLSFNKLSGTIPSTYAAMNSSNYIFLTGNLLTGLVPPTWRKNTYVDLSYNNFSISQGSQICRDDSVNLFSTSWAHNDLGTVSCLSLKCPKPSNSLYINCGGNQAIVNRATYDGDSDSYGPARFHASPTGNWAFSSTGVFIESDILGRTFTPQNISKLTMADAELYMNARISPISLTYYGFCLASGSYTVNLHFAEIMFTDDQTYGSLGRRVFDIYIQGKQMQKDFNIAEEAGGVGKKIIKQFKDVVVSSNTLEIRLYWAGKGTQAVPNKSVYGPLISAISVESADSPPGSISAGVVVGIVVATTVIIILVFGILWWKGCFGKKNSLARELESLDIQTGLFTLRQINAATNHFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSRQGNREFLNEIGIISALQHPNLVKLCGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIRLDWSTRKKIYVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSYGIVALEIVSGRSNTLYQSKEEPFYLLDWAHLLKERGDLMELVDRRLGSDFNKKEAMVVINVALLCTNVTSNLRPAMSSVVSFLEGRAVVPEFVSDSSEVMDEKKLEVMRQYYYQKEENKISSTPQTQSQCLISDGPWTATSSSAVDLYPVHLDSSYWEERN 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03376 1011 SMART serkin_6 662 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03376 1011 SUPERFAMILY L domain-like 85 362 - -
Vifa1g03376 1011 Gene3D Ribonuclease Inhibitor 30 269 IPR032675 -
Vifa1g03376 1011 Pfam Malectin domain 405 589 IPR021720 -
Vifa1g03376 1011 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 966 - -
Vifa1g03376 1011 Gene3D Transferase(Phosphotransferase) domain 1 738 946 - -
Vifa1g03376 1011 Gene3D Ribonuclease Inhibitor 270 382 IPR032675 -
Vifa1g03376 1011 Gene3D Phosphorylase Kinase; domain 1 630 737 - -
Vifa1g03376 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Vifa1g03376 1011 Gene3D - 403 595 - -
Vifa1g03376 1011 Pfam Protein kinase domain 664 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03376 1011 CDD STKc_IRAK 668 935 - -
Vifa1g03376 1011 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 36 200 - -
Vifa1g03376 1011 ProSiteProfiles Protein kinase domain profile. 662 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03376 1011 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 402 594 - -
Vifa1g03376 1011 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 631 737 - -
Vifa1g03376 1011 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 201 267 - -
Vifa1g03376 1011 FunFam Putative LRR receptor-like serine/threonine-protein kinase 738 945 - -
Vifa1g03376 1011 SUPERFAMILY Protein kinase-like (PK-like) 645 947 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03376 Vifa-Chr1 527631914 527640258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03376 29 962 Receptor kinase-like Gene Family AT1G53420 54.325 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03376 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03376 - - gmx:732563 1297.34