Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03375 ATGCAGGGATGTTTACCCAATGGGACATTAATAGCAGTAAAGCAACTTTCATCTAACTCAAAGCAAGGGAATGGTGAGTTTTTAAATGAGATAGGCATGATTTCTGCATTGCAACACCCTAATCTTGTTAAACTCTATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACATGGAAAACAATAGTTTAGCTCGTGCTTTATTTGGTCCACAAGAACTCCAAATAAGATTAGATTGGTCAACTGGGAAGAAGATCTGTGTTGGCATTGCTAGAGGATTGGCATACCTCCATGAAGAATCAAGATTGAAGGTTGTTCACAGGGACATCAAAGCCACTAATGTGTTGCTTGATAAAGATCTTAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAAGAGGACAACACTCACATTAGCACTAGAATTGCTGGACCTAGTGACGGATATATAGCTCCTGAATACACAATTCATGGTTATTTGACAGACAAAGCAGATGTTTATAGTTATGGAATTGTTGTCTTAGAAATCATTAGTGGAAAGAATAACACCCTTTGTCGGTCAAAGGAGGAGGCATTATATCTTCTTGATTGGGCACATTTATTGAAGGAGAGGGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGTTCTGATTTCAACAAAAAGGAAGCTATGGTGGTAATCAATGTGGCTCTCCTATGCACCAATGTCACTTCAAATCTTAGGCCCGCCATGTCGTCAGTTGTAAGTTTCCTTGAAGGGAGGGCTGTGGTACCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAAGAAGTTGGAAGTAATGAGGCAGTATTACTATCAGAAGGAAGAAAATAAGATAAGTAGTACGCCACAAACACAAAGTCAGTGCTTAATAAGTGATGGGCCATGGACTGCCACATCTTCATCAGCTGTAGACCTTTATCCTGTCCACCTTGATTCTTCCTATTGGGAGGAAAGAAATTAA 1011 0.3947 MQGCLPNGTLIAVKQLSSNSKQGNGEFLNEIGMISALQHPNLVKLYGCCVEGDQLLLIYEYMENNSLARALFGPQELQIRLDWSTGKKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGPSDGYIAPEYTIHGYLTDKADVYSYGIVVLEIISGKNNTLCRSKEEALYLLDWAHLLKERGDLMELVDRRLGSDFNKKEAMVVINVALLCTNVTSNLRPAMSSVVSFLEGRAVVPEFVSDSSEVMDEKKLEVMRQYYYQKEENKISSTPQTQSQCLISDGPWTATSSSAVDLYPVHLDSSYWEERN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03375 336 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 291 - -
Vifa1g03375 336 ProSiteProfiles Protein kinase domain profile. 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03375 336 Gene3D Transferase(Phosphotransferase) domain 1 63 273 - -
Vifa1g03375 336 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03375 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 108 120 IPR008271 GO:0004672|GO:0006468
Vifa1g03375 336 SUPERFAMILY Protein kinase-like (PK-like) 6 273 IPR011009 -
Vifa1g03375 336 FunFam Putative LRR receptor-like serine/threonine-protein kinase 62 270 - -
Vifa1g03375 336 Gene3D Phosphorylase Kinase; domain 1 1 62 - -
Vifa1g03375 336 Pfam Protein tyrosine and serine/threonine kinase 9 258 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03375 Vifa-Chr1 527572119 527573831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03375 2 321 Receptor kinase-like Gene Family AT1G07650 61.059 2.29e-134 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03375 PK_Tyr_Ser-Thr 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03375 - - gmx:100785451 521.161