Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03373 ATGGCTACGCTTCTTCCTTCTTCCCTCACAAACCCAAATAAACTCTTCCACAATGTATCACTTTCCACTTCACCCTCTTCTCTAACAACCACTTCAGTTTCTCTTTACCCTAAAACGCGACGTTTTGGTCGTCGTTTTGGGTCCGTTAGATGCTGTTTAGCTTATGTCGATAACGCTAAGATTAAGGTCGTGGGAATTGGGGGTGGTGGTAACAATGCCGTTAACCGCATGATTGGTAGTGGTTTGCAGGGTGTAGATTTCTATGCGATAAATACGGATGCTCAAGCGCTACTGCATTCTGCAGCCGAGAATCCTATTAAAATTGGAGAGCTTCTGACTCGAGGATTAGGTACTGGTGGGAATCCGCTTTTGGGGGAACAAGCTGCGGAGGAATCGAAAGAGGCTATTGCTAATGCCCTTAAAGGATCGGATTTGGTGTTTATAACAGCTGGGATGGGTGGGGGTACAGGGTCCGGCGCTGCACCTGTTGTGGCTCAAATATCAAAAGAGGCAGGTTACTTGACCGTCGGTGTTGTTACCTATCCTTTCAGTTTTGAAGGAAGGAAAAGATCCTTGCAGGCACTTGAAGCCATTGAAAAGCTTCAGAAAAATGTTGATACCCTTATTGTAATTCCAAATGACCGTCTGCTTGACATAGCCGACGAGCAGATGCCTCTCCAGGATGCTTTTCGTCTAGCGGATGATGTTTTACGCCAAGGAGTTCAGGGAATTTCAGACATTATAACAATACCTGGACTTGTAAATGTGGATTTTGCTGATGTAAAAGCCGTGATGAAAGACTCTGGTACTGCAATGCTCGGAGTAGGTGTTTCATCCGGTAAAAACCGAGCAGAAGAAGCAGCTGAACAGGCTACTTTGGCTCCTTTAATTGGATCATCTATTCAATCAGCCACAGGAGTAGTGTATAACATTACTGGAGGAAAGGACATCACCCTGCAGGAAGTCAACAGGGTATCTCAGGTTGTGACTAGTTTGGCCGATCCTTCTGCCAATATTATATTTGGAGCTGTTGTAGATGATCGTTACACCGGAGAGATTCACGTGACTATCATCGCCACTGGCTTTTCGCAATCTTTTCAGAAGAAGCTGCTAACAGATCCAAGGGCTGCAAAGCTTCTTGACAAAGTGGCCGAGGGAAAAGAAAGCAAGACAGTGCCTCCTCCCCTCAAGTCCTCAAACTTATCTTCCAAAGTTGAATCTAGAGCACCACCCCCACGAAAGCTCTTTTTTTAG 1254 0.4553 MATLLPSSLTNPNKLFHNVSLSTSPSSLTTTSVSLYPKTRRFGRRFGSVRCCLAYVDNAKIKVVGIGGGGNNAVNRMIGSGLQGVDFYAINTDAQALLHSAAENPIKIGELLTRGLGTGGNPLLGEQAAEESKEAIANALKGSDLVFITAGMGGGTGSGAAPVVAQISKEAGYLTVGVVTYPFSFEGRKRSLQALEAIEKLQKNVDTLIVIPNDRLLDIADEQMPLQDAFRLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSGKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYTGEIHVTIIATGFSQSFQKKLLTDPRAAKLLDKVAEGKESKTVPPPLKSSNLSSKVESRAPPPRKLFF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03373 417 ProSitePatterns FtsZ protein signature 1. 91 125 IPR020805 GO:0005525
Vifa1g03373 417 NCBIfam cell division protein FtsZ 57 371 IPR000158 GO:0003924|GO:0005525
Vifa1g03373 417 SMART Tubulin_4 60 252 IPR003008 GO:0005525
Vifa1g03373 417 Pfam Tubulin/FtsZ family, GTPase domain 60 220 IPR003008 GO:0005525
Vifa1g03373 417 SUPERFAMILY Tubulin C-terminal domain-like 254 370 IPR008280 -
Vifa1g03373 417 ProSitePatterns FtsZ protein signature 2. 144 165 IPR020805 GO:0005525
Vifa1g03373 417 Pfam FtsZ family, C-terminal domain 269 362 IPR024757 -
Vifa1g03373 417 Hamap Cell division protein FtsZ [ftsZ]. 56 386 IPR000158 GO:0003924|GO:0005525
Vifa1g03373 417 MobiDBLite consensus disorder prediction 384 417 - -
Vifa1g03373 417 SUPERFAMILY Tubulin nucleotide-binding domain-like 59 255 IPR036525 -
Vifa1g03373 417 Gene3D Tubulin/FtsZ, GTPase domain 54 267 IPR036525 -
Vifa1g03373 417 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 56 375 IPR045061 GO:0003924|GO:0005525
Vifa1g03373 417 SMART Tubulin_C_4 254 371 IPR018316 -
Vifa1g03373 417 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 153 159 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vifa1g03373 417 Gene3D - 268 374 IPR037103 -
Vifa1g03373 417 FunFam Cell division protein FtsZ 1, chloroplastic 225 362 - -
Vifa1g03373 417 CDD FtsZ_type1 73 361 IPR000158 GO:0003924|GO:0005525
Vifa1g03373 417 PRINTS Cell division protein FtsZ signature 236 258 IPR003008 GO:0005525
Vifa1g03373 417 PRINTS Cell division protein FtsZ signature 145 165 IPR003008 GO:0005525
Vifa1g03373 417 PRINTS Cell division protein FtsZ signature 173 194 IPR003008 GO:0005525
Vifa1g03373 417 PRINTS Cell division protein FtsZ signature 259 280 IPR003008 GO:0005525
Vifa1g03373 417 FunFam Cell division protein FtsZ 1, chloroplastic 53 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03373 Vifa-Chr1 527492063 527494193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03373 148 356 PP2C-type Phosphatase Gene Family AT1G75010 21.461 8.89e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03373 K03531 - gmx:100808722 665.611