Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03371 ATGAGCACTACCTCTCCATATTCCCCCCTTTCACTCATTGCCATTTTGTTCTTATCTCTAACAGCTTTTGGGGCTAATACTATTCACCCGGACGAAAAGGAAGCTCTTAAAGATATAGCTAAATCACTTGGGAAGAAGGATTGGAACTTTGATATTGATCCCTGCAGCAACAAACCTAACTGGGTTACCACTCCCATACCCAAAGTCTTAGAAAACAATGTTACCTGTGACTGCTCTGTTGCTGGTGACAACTTCTGTCATGTTGTTTCAGTAATTTTGAAAGGGCAAAATCTACCCGGCACTCTCCCACCAGAACTGACGAGGTTGCGTTATCTTCAAAATCTTGACCTCTCTCGCAATTACTTGAATGGTACAATTCCAAAACAATGGGGCTCCATGATGAGTATCAGTAAAATTGCCCTCCTTGGAAATCGATTAACGGGTTCAATACCAGCTGAGATTGCAAACATTTCTACTCTCCAAATTTTGGAGTTGTGGAACAATCAAATGTCTGGAAATCTCCCCCCTGAGCTTGGAAATTTAACCCAGATTCAAACACTGCGACTTTCCTCTAACAATTTTAGTGGAGAACTACCTGCGACATTGGCTAAGCTCACTACATTGCTAGTTTTCCGAATTGAGGACAACCAATTTTTTGGAAAGATACCTGATTATATTCAGAACTGGACAAGTCTCAACACACTAGTGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCTCTTTTGAGAAACTTAACTGACTTGAGAATTAGTGATTTGAATGGATCTGAATATGCACCTTTGCCAGAACTTGATAAAATGACTTCGTTAAAAACTCTGGTTCTGAGGAACTGCAATATGAGTGGAAAATTATATGAAAATCTTGGGACTATTACATCATTAAAACTCTTAGACCTCAGCTTTAACAACTTAAGTGGCACAATTCCGTGGACCTATGCCACCATGAATAGTTCGAATTACATATTTTTAACTGGAAACCTTCTCACTGGACCAGTGCCTTCTACTTGGAGAAAGAATACCTACGTAGATCTTTCATACAATAACTTCAGCATCAACCAAGGGAGTCAGATATGTCAAGATGAGAGGGTGAACTTAGAAACAGTTCCGTGTTTGAGCTTTAAATGTCCCAAACCCTCATACTCCCTTTATATAAATTGTGGGGGAAATCAAGCAATAGTCAACGGAAAAAGTTATGACGGTGATTCAGATTCAGCTGGACCAGCTAAATTTCATGCCAGTTCAACTGGAAATTGGGCATTTAGCACCACTGGTGTATTCATGGAAAATGATCTACTTGTAAAAACATTTGTCCCGCAAAATACCTCCAAACTAACTACGGCAGATGGTGAATTGTACACCAATGCACGTATTTCTCCCATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAATGGAAGCTACACAGTAAATCTGCATTTTGCTGAAATAATGTTCACAGACCATCAACCGTATGGTAGTCTTGGAAGGCGTGTATTTGATATTTACCTTCAGGGAAAGCAGATGCAAAAGGACTTCAATATTGCCCAAGAAGCAGGAGGAGTTGGTAGGAAAATCATAAAACAGTTCAAAGATGTTGTTGTTTCTAGTAACACTTTGGAGATCCGTTTATATTGGGCTGGAAAAGGGACACAGGCTGTCCCAAATAAATCTGTATATGGTCCTCTTATATCGGCTATCTCAGTGGAATCTGCAGACTCTCCTCCTGGAAGAATATCTGCAGTAGTTGTGGTTGGAATTGTGGTTGCAGCAACAACTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAACTCATTAGTAGGAGAGCTGGAGAGTTTAGGCCTACAAACAAGTTTATTTACCTTAAGACAAATCAAAGCAGCCACAAATAACTTTGATGTTTCCAATAAGGTTGGAGAAGGAGGGTTTGGCCCCGTGTATAAGGGATGTTTACCCAATGGGACATTAATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTTCTTTGCAACACCCTTATCTTGTTAAACTCTATGGTTTCTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTTTAGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATTAAATTAGATTGGCCAACAAGGAAGAAGATTTGTATTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTGTTGCTTGATAAAGATCTTGAGCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGTACTAGGATTGCTGGGACCTACGGATATATGGCTCCTGAATACGCAATGCATGGTTATTTGACAGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGTCTTGGAAATTGTTAGTGGAAAGAACAACACTCTTTATCGGTCAAAGGAGGAAGCATTCTATCTTCTTAATTGGGCACATTTGTTGAAAGAGAAAGGTGACCTCATGGAGCTAGTTGATACAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATGGTGGTAATCAACGTGGCTCTCCTATGCACCAATGTCACTTCAAACCGTAGGCCCTCCATGTCGTCGGTGATGGAAGAAAATAAGATAAATACAACCTCACAAACACAAGGTCAGAGTTTATTAAGTGATGGGCCATGGACTGCTTCATCTTCATCAGCTGTAGACCTTTATCCTGTCCACCTCGGTTCGTCCTATTGGGAGGAGAGAAATTAA 2895 0.3986 MSTTSPYSPLSLIAILFLSLTAFGANTIHPDEKEALKDIAKSLGKKDWNFDIDPCSNKPNWVTTPIPKVLENNVTCDCSVAGDNFCHVVSVILKGQNLPGTLPPELTRLRYLQNLDLSRNYLNGTIPKQWGSMMSISKIALLGNRLTGSIPAEIANISTLQILELWNNQMSGNLPPELGNLTQIQTLRLSSNNFSGELPATLAKLTTLLVFRIEDNQFFGKIPDYIQNWTSLNTLVIQGSGLSGPIPSGISLLRNLTDLRISDLNGSEYAPLPELDKMTSLKTLVLRNCNMSGKLYENLGTITSLKLLDLSFNNLSGTIPWTYATMNSSNYIFLTGNLLTGPVPSTWRKNTYVDLSYNNFSINQGSQICQDERVNLETVPCLSFKCPKPSYSLYINCGGNQAIVNGKSYDGDSDSAGPAKFHASSTGNWAFSTTGVFMENDLLVKTFVPQNTSKLTTADGELYTNARISPISLTYYGFCLANGSYTVNLHFAEIMFTDHQPYGSLGRRVFDIYLQGKQMQKDFNIAQEAGGVGRKIIKQFKDVVVSSNTLEIRLYWAGKGTQAVPNKSVYGPLISAISVESADSPPGRISAVVVVGIVVAATTIIILVFGILWWKGCFGKKNSLVGELESLGLQTSLFTLRQIKAATNNFDVSNKVGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISSLQHPYLVKLYGFCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWPTRKKICIGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLEPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIVSGKNNTLYRSKEEAFYLLNWAHLLKEKGDLMELVDTRLGSDFNKKEAMVVINVALLCTNVTSNRRPSMSSVMEENKINTTSQTQGQSLLSDGPWTASSSSAVDLYPVHLGSSYWEERN 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03371 964 Pfam Protein kinase domain 651 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03371 964 Pfam Malectin domain 392 577 IPR021720 -
Vifa1g03371 964 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 198 - -
Vifa1g03371 964 Gene3D Ribonuclease Inhibitor 31 200 IPR032675 -
Vifa1g03371 964 SUPERFAMILY L domain-like 66 347 - -
Vifa1g03371 964 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 199 265 - -
Vifa1g03371 964 ProSiteProfiles Protein kinase domain profile. 650 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03371 964 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 390 582 - -
Vifa1g03371 964 Gene3D Transferase(Phosphotransferase) domain 1 726 937 - -
Vifa1g03371 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 772 784 IPR008271 GO:0004672|GO:0006468
Vifa1g03371 964 Gene3D - 390 583 - -
Vifa1g03371 964 Gene3D Phosphorylase Kinase; domain 1 620 725 - -
Vifa1g03371 964 CDD STKc_IRAK 656 920 - -
Vifa1g03371 964 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 934 - -
Vifa1g03371 964 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 619 725 - -
Vifa1g03371 964 FunFam Putative LRR receptor-like serine/threonine-protein kinase 726 931 - -
Vifa1g03371 964 MobiDBLite consensus disorder prediction 923 943 - -
Vifa1g03371 964 SMART serkin_6 650 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03371 964 Gene3D Ribonuclease Inhibitor 201 374 IPR032675 -
Vifa1g03371 964 SUPERFAMILY Protein kinase-like (PK-like) 634 923 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03371 Vifa-Chr1 526828435 526845157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03371 27 919 Receptor kinase-like Gene Family AT1G53420 55.778 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03371 Pkinase 7.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03371 - - gmx:732563 1226.46