Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03370 ATGAGCACTACCTCTCCATATTCCCCCCTTTCACTCATTGCCATTTTGTTCTTATCTCTAACAGCTTTTGGGGCTAATACTATTCACCCGGACGAAAAGGAAGCTCTTAAAGATATAGCTAAATCACTTGGGAAGAAGGATTGGAACTTTGATATTGATCCCTGCAGCAACAAACCTAACTGGGTTACCACTCCCATACCCAAAGTCTTAGAAAACAATGTTACCTGTGACTGCTCTGTTGCTGGTGACAACTTCTGTCATGTTGTTTCAGTAATTTTGAAAGGGCAAAATCTACCCGGCACTCTCCCACCAGAACTGACGAGGTTGCGTTATCTTCAAAATCTTGACCTCTCTCGCAATTACTTGAATGGTACAATTCCAAAACAATGGGGCTCCATGATGAGTATCAGTAAAATTGCCCTCCTTGGAAATCGATTAACGGGTTCAATACCAGCTGAGATTGCAAACATTTCTACTCTCCAAATTTTGGAGTTGTGGAACAATCAAATGTCTGGAAATCTCCCCCCTGAGCTTGGAAATTTAACCCAGATTCAAACACTGCGACTTTCCTCTAACAATTTTAGTGGAGAACTACCTGCGACATTGGCTAAGCTCACTACATTGCTAGTTTTCCGAATTGAGGACAACCAATTTTTTGGAAAGATACCTGATTATATTCAGAACTGGACAAGTCTCAACACACTAGTGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCTCTTTTGAGAAACTTAACTGACTTGAGAATTAGTGATTTGAATGGATCTGAATATGCACCTTTGCCAGAACTTGATAAAATGACTTCGTTAAAAACTCTGGTTCTGAGGAACTGCAATATGAGTGGAAAATTATATGAAAATCTTGGGACTATTACATCATTAAAACTCTTAGACCTCAGCTTTAACAACTTAAGTGGCACAATTCCGTGGACCTATGCCACCATGAATAGTTCGAATTACATATTTTTAACTGGAAACCTTCTCACTGGACCAGTGCCTTCTACTTGGAGAAAGAATACCTACGTAGATCTTTCATACAATAACTTCAGCATCAACCAAGGGAGTCAGATATGTCAAGATGAGAGGGTGAACTTAGAAACAGTTCCGTGTTTGAGCTTTAAATGTCCCAAACCCTCATACTCCCTTTATATAAATTGTGGGGGAAATCAAGCAATAGTCAACGGAAAAAGTTATGACGGTGATTCAGATTCAGCTGGACCAGCTAAATTTCATGCCAGTTCAACTGGAAATTGGGCATTTAGCACCACTGGTGTATTCATGGAAAATGATCTACTTGTAAAAACATTTGTCCCGCAAAATACCTCCAAACTAACTACGGCAGATGGTGAATTGTACACCAATGCACGTATTTCTCCCATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAATGGAAGCTACACAGTAAATCTGCATTTTGCTGAAATAATGTTCACAGACCATCAACCGTATGGTAGTCTTGGAAGGCGTGTATTTGATATTTACCTTCAGGGAAAGCAGATGCAAAAGGACTTCAATATTGCCCAAGAAGCAGGAGGAGTTGGTAGGAAAATCATAAAACAGTTCAAAGATGTTGTTGTTTCTAGTAACACTTTGGAGATCCGTTTATATTGGGCTGGAAAAGGGACACAGGCTGTCCCAAATAAATCTGTATATGGTCCTCTTATATCGGCTATCTCAGTGGAATCTGACTCTCCTCCTGGAAGAATATCTGCAGTAGTTGTGGTTGGAATTGTGGTTGCAGCAACAACTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAACTCATTAGTAGGAGAGCTGGAGAGTTTAGGCCTACAAACAAGTTTATTTACCTTAAGACAAATCAAAGCAGCCACAAATAACTTTGATGTTTCCAATAAGGTTGGAGAAGGAGGGTTTGGCCCCGTGTATAAGGGATGTTTACCCAATGGGACATTAATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTTCTTTGCAACACCCTTATCTTGTTAAACTCTATGGTTTCTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTTTAGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATTAAATTAGATTGGCCAACAAGGAAGAAGATTTGTATTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTGTTGCTTGATAAAGATCTTGAGCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGTACTAGGATTGCTGGGACCTACGGATATATGGCTCCTGAATACGCAATGCATGGTTATTTGACAGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGTCTTGGAAATTGTTAGTGGAAAGAACAACACTCTTTATCGGTCAAAGGAGGAAGCATTCTATCTTCTTAATTGGGCACATTTGTTGAAAGAGAAAGGTGACCTCATGGAGCTAGTTGATACAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATGGTGGTAATCAACGTGGCTCTCCTATGCACCAATGTCACTTCAAACCGTAGGCCCTCCATGTCGTCGGTGATGGAAGAAAATAAGATAAATACAACCTCACAAACACAAGGTCAGAGTTTATTAAGTGATGGGCCATGGACTGCTTCATCTTCATCAGCTGTAGACCTTTATCCTGTCCACCTCGGTTCGTCCTATTGGGAGGAGAGAAATTAA 2892 0.3983 MSTTSPYSPLSLIAILFLSLTAFGANTIHPDEKEALKDIAKSLGKKDWNFDIDPCSNKPNWVTTPIPKVLENNVTCDCSVAGDNFCHVVSVILKGQNLPGTLPPELTRLRYLQNLDLSRNYLNGTIPKQWGSMMSISKIALLGNRLTGSIPAEIANISTLQILELWNNQMSGNLPPELGNLTQIQTLRLSSNNFSGELPATLAKLTTLLVFRIEDNQFFGKIPDYIQNWTSLNTLVIQGSGLSGPIPSGISLLRNLTDLRISDLNGSEYAPLPELDKMTSLKTLVLRNCNMSGKLYENLGTITSLKLLDLSFNNLSGTIPWTYATMNSSNYIFLTGNLLTGPVPSTWRKNTYVDLSYNNFSINQGSQICQDERVNLETVPCLSFKCPKPSYSLYINCGGNQAIVNGKSYDGDSDSAGPAKFHASSTGNWAFSTTGVFMENDLLVKTFVPQNTSKLTTADGELYTNARISPISLTYYGFCLANGSYTVNLHFAEIMFTDHQPYGSLGRRVFDIYLQGKQMQKDFNIAQEAGGVGRKIIKQFKDVVVSSNTLEIRLYWAGKGTQAVPNKSVYGPLISAISVESDSPPGRISAVVVVGIVVAATTIIILVFGILWWKGCFGKKNSLVGELESLGLQTSLFTLRQIKAATNNFDVSNKVGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISSLQHPYLVKLYGFCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWPTRKKICIGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLEPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIVSGKNNTLYRSKEEAFYLLNWAHLLKEKGDLMELVDTRLGSDFNKKEAMVVINVALLCTNVTSNRRPSMSSVMEENKINTTSQTQGQSLLSDGPWTASSSSAVDLYPVHLGSSYWEERN 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03370 963 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 198 - -
Vifa1g03370 963 ProSiteProfiles Protein kinase domain profile. 649 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03370 963 SMART serkin_6 649 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03370 963 SUPERFAMILY L domain-like 66 347 - -
Vifa1g03370 963 Gene3D Ribonuclease Inhibitor 201 374 IPR032675 -
Vifa1g03370 963 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 199 265 - -
Vifa1g03370 963 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 618 724 - -
Vifa1g03370 963 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 933 - -
Vifa1g03370 963 Pfam Protein kinase domain 650 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03370 963 MobiDBLite consensus disorder prediction 922 942 - -
Vifa1g03370 963 Gene3D Ribonuclease Inhibitor 31 200 IPR032675 -
Vifa1g03370 963 Gene3D Transferase(Phosphotransferase) domain 1 725 936 - -
Vifa1g03370 963 Pfam Malectin domain 392 577 IPR021720 -
Vifa1g03370 963 Gene3D - 390 582 - -
Vifa1g03370 963 CDD STKc_IRAK 655 919 - -
Vifa1g03370 963 FunFam Putative LRR receptor-like serine/threonine-protein kinase 725 930 - -
Vifa1g03370 963 Gene3D Phosphorylase Kinase; domain 1 619 724 - -
Vifa1g03370 963 ProSitePatterns Serine/Threonine protein kinases active-site signature. 771 783 IPR008271 GO:0004672|GO:0006468
Vifa1g03370 963 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 390 582 - -
Vifa1g03370 963 SUPERFAMILY Protein kinase-like (PK-like) 633 922 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03370 Vifa-Chr1 526828435 526845157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03370 27 918 Receptor kinase-like Gene Family AT1G53420 55.729 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03370 Pkinase 7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03370 - - gmx:732563 1226.08