Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g03370 | ATGAGCACTACCTCTCCATATTCCCCCCTTTCACTCATTGCCATTTTGTTCTTATCTCTAACAGCTTTTGGGGCTAATACTATTCACCCGGACGAAAAGGAAGCTCTTAAAGATATAGCTAAATCACTTGGGAAGAAGGATTGGAACTTTGATATTGATCCCTGCAGCAACAAACCTAACTGGGTTACCACTCCCATACCCAAAGTCTTAGAAAACAATGTTACCTGTGACTGCTCTGTTGCTGGTGACAACTTCTGTCATGTTGTTTCAGTAATTTTGAAAGGGCAAAATCTACCCGGCACTCTCCCACCAGAACTGACGAGGTTGCGTTATCTTCAAAATCTTGACCTCTCTCGCAATTACTTGAATGGTACAATTCCAAAACAATGGGGCTCCATGATGAGTATCAGTAAAATTGCCCTCCTTGGAAATCGATTAACGGGTTCAATACCAGCTGAGATTGCAAACATTTCTACTCTCCAAATTTTGGAGTTGTGGAACAATCAAATGTCTGGAAATCTCCCCCCTGAGCTTGGAAATTTAACCCAGATTCAAACACTGCGACTTTCCTCTAACAATTTTAGTGGAGAACTACCTGCGACATTGGCTAAGCTCACTACATTGCTAGTTTTCCGAATTGAGGACAACCAATTTTTTGGAAAGATACCTGATTATATTCAGAACTGGACAAGTCTCAACACACTAGTGATTCAAGGAAGTGGATTAAGTGGGCCGATTCCTTCTGGAATTTCTCTTTTGAGAAACTTAACTGACTTGAGAATTAGTGATTTGAATGGATCTGAATATGCACCTTTGCCAGAACTTGATAAAATGACTTCGTTAAAAACTCTGGTTCTGAGGAACTGCAATATGAGTGGAAAATTATATGAAAATCTTGGGACTATTACATCATTAAAACTCTTAGACCTCAGCTTTAACAACTTAAGTGGCACAATTCCGTGGACCTATGCCACCATGAATAGTTCGAATTACATATTTTTAACTGGAAACCTTCTCACTGGACCAGTGCCTTCTACTTGGAGAAAGAATACCTACGTAGATCTTTCATACAATAACTTCAGCATCAACCAAGGGAGTCAGATATGTCAAGATGAGAGGGTGAACTTAGAAACAGTTCCGTGTTTGAGCTTTAAATGTCCCAAACCCTCATACTCCCTTTATATAAATTGTGGGGGAAATCAAGCAATAGTCAACGGAAAAAGTTATGACGGTGATTCAGATTCAGCTGGACCAGCTAAATTTCATGCCAGTTCAACTGGAAATTGGGCATTTAGCACCACTGGTGTATTCATGGAAAATGATCTACTTGTAAAAACATTTGTCCCGCAAAATACCTCCAAACTAACTACGGCAGATGGTGAATTGTACACCAATGCACGTATTTCTCCCATTTCTTTGACTTATTATGGGTTTTGCCTGGCAAATGGAAGCTACACAGTAAATCTGCATTTTGCTGAAATAATGTTCACAGACCATCAACCGTATGGTAGTCTTGGAAGGCGTGTATTTGATATTTACCTTCAGGGAAAGCAGATGCAAAAGGACTTCAATATTGCCCAAGAAGCAGGAGGAGTTGGTAGGAAAATCATAAAACAGTTCAAAGATGTTGTTGTTTCTAGTAACACTTTGGAGATCCGTTTATATTGGGCTGGAAAAGGGACACAGGCTGTCCCAAATAAATCTGTATATGGTCCTCTTATATCGGCTATCTCAGTGGAATCTGACTCTCCTCCTGGAAGAATATCTGCAGTAGTTGTGGTTGGAATTGTGGTTGCAGCAACAACTATTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAACTCATTAGTAGGAGAGCTGGAGAGTTTAGGCCTACAAACAAGTTTATTTACCTTAAGACAAATCAAAGCAGCCACAAATAACTTTGATGTTTCCAATAAGGTTGGAGAAGGAGGGTTTGGCCCCGTGTATAAGGGATGTTTACCCAATGGGACATTAATAGCAGTAAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAGATAGGCATGATTTCTTCTTTGCAACACCCTTATCTTGTTAAACTCTATGGTTTCTGTGTGGAGGGAGATCAGTTGTTGCTGATATATGAATACTTGGAAAACAATAGTTTAGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATTAAATTAGATTGGCCAACAAGGAAGAAGATTTGTATTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTGTTGCTTGATAAAGATCTTGAGCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGTACTAGGATTGCTGGGACCTACGGATATATGGCTCCTGAATACGCAATGCATGGTTATTTGACAGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGTCTTGGAAATTGTTAGTGGAAAGAACAACACTCTTTATCGGTCAAAGGAGGAAGCATTCTATCTTCTTAATTGGGCACATTTGTTGAAAGAGAAAGGTGACCTCATGGAGCTAGTTGATACAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATGGTGGTAATCAACGTGGCTCTCCTATGCACCAATGTCACTTCAAACCGTAGGCCCTCCATGTCGTCGGTGATGGAAGAAAATAAGATAAATACAACCTCACAAACACAAGGTCAGAGTTTATTAAGTGATGGGCCATGGACTGCTTCATCTTCATCAGCTGTAGACCTTTATCCTGTCCACCTCGGTTCGTCCTATTGGGAGGAGAGAAATTAA | 2892 | 0.3983 | MSTTSPYSPLSLIAILFLSLTAFGANTIHPDEKEALKDIAKSLGKKDWNFDIDPCSNKPNWVTTPIPKVLENNVTCDCSVAGDNFCHVVSVILKGQNLPGTLPPELTRLRYLQNLDLSRNYLNGTIPKQWGSMMSISKIALLGNRLTGSIPAEIANISTLQILELWNNQMSGNLPPELGNLTQIQTLRLSSNNFSGELPATLAKLTTLLVFRIEDNQFFGKIPDYIQNWTSLNTLVIQGSGLSGPIPSGISLLRNLTDLRISDLNGSEYAPLPELDKMTSLKTLVLRNCNMSGKLYENLGTITSLKLLDLSFNNLSGTIPWTYATMNSSNYIFLTGNLLTGPVPSTWRKNTYVDLSYNNFSINQGSQICQDERVNLETVPCLSFKCPKPSYSLYINCGGNQAIVNGKSYDGDSDSAGPAKFHASSTGNWAFSTTGVFMENDLLVKTFVPQNTSKLTTADGELYTNARISPISLTYYGFCLANGSYTVNLHFAEIMFTDHQPYGSLGRRVFDIYLQGKQMQKDFNIAQEAGGVGRKIIKQFKDVVVSSNTLEIRLYWAGKGTQAVPNKSVYGPLISAISVESDSPPGRISAVVVVGIVVAATTIIILVFGILWWKGCFGKKNSLVGELESLGLQTSLFTLRQIKAATNNFDVSNKVGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISSLQHPYLVKLYGFCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWPTRKKICIGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLEPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEIVSGKNNTLYRSKEEAFYLLNWAHLLKEKGDLMELVDTRLGSDFNKKEAMVVINVALLCTNVTSNRRPSMSSVMEENKINTTSQTQGQSLLSDGPWTASSSSAVDLYPVHLGSSYWEERN | 963 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g03370 | 963 | FunFam | Probable LRR receptor-like serine/threonine-protein kinase RFK1 | 34 | 198 | - | - | |
Vifa1g03370 | 963 | ProSiteProfiles | Protein kinase domain profile. | 649 | 922 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g03370 | 963 | SMART | serkin_6 | 649 | 928 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g03370 | 963 | SUPERFAMILY | L domain-like | 66 | 347 | - | - | |
Vifa1g03370 | 963 | Gene3D | Ribonuclease Inhibitor | 201 | 374 | IPR032675 | - | |
Vifa1g03370 | 963 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase isoform A | 199 | 265 | - | - | |
Vifa1g03370 | 963 | FunFam | probable LRR receptor-like serine/threonine-protein kinase At1g53430 | 618 | 724 | - | - | |
Vifa1g03370 | 963 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 21 | 933 | - | - | |
Vifa1g03370 | 963 | Pfam | Protein kinase domain | 650 | 919 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g03370 | 963 | MobiDBLite | consensus disorder prediction | 922 | 942 | - | - | |
Vifa1g03370 | 963 | Gene3D | Ribonuclease Inhibitor | 31 | 200 | IPR032675 | - | |
Vifa1g03370 | 963 | Gene3D | Transferase(Phosphotransferase) domain 1 | 725 | 936 | - | - | |
Vifa1g03370 | 963 | Pfam | Malectin domain | 392 | 577 | IPR021720 | - | |
Vifa1g03370 | 963 | Gene3D | - | 390 | 582 | - | - | |
Vifa1g03370 | 963 | CDD | STKc_IRAK | 655 | 919 | - | - | |
Vifa1g03370 | 963 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 725 | 930 | - | - | |
Vifa1g03370 | 963 | Gene3D | Phosphorylase Kinase; domain 1 | 619 | 724 | - | - | |
Vifa1g03370 | 963 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 771 | 783 | IPR008271 | GO:0004672|GO:0006468 | |
Vifa1g03370 | 963 | FunFam | Putative leucine-rich repeat receptor-like serine/threonine-protein kinase | 390 | 582 | - | - | |
Vifa1g03370 | 963 | SUPERFAMILY | Protein kinase-like (PK-like) | 633 | 922 | IPR011009 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g03370 | Vifa-Chr1 | 526828435 | 526845157 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g03370 | 27 | 918 | Receptor kinase-like Gene Family | AT1G53420 | 55.729 | 0.0 | 966 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Vifa1g03370 | Pkinase | 7e-48 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g03370 | - | - | gmx:732563 | 1226.08 |