Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03369 ATGTCTGACCTAGACAGACAAATTGAGCAGCTGAAACGATGCGAACCTCTGAAGGAATCTGAAGTGAAAGCTCTCTGCCTCAAAGCCATTGAAATCCTCGTCGAAGAAAGCAATGTTCAAAGGGTCGACGCTCCTGTCACCATATGTGGGGATATTCATGGACAGTTTTATGATATGAAAGAGCTTTTTAAAGTGGGAGGTGATTGCCCTAAGACTAACTATTTGTTCCTTGGGGATTTTGTTGATAGAGGATTTTATTCGGTCGAAACGTTTCTGCTTTTGCTCGCTCTCAAGGTGAGGTATCCAGATCGGATAACACTCATTAGGGGAAACCATGAAAGTCGTCAGATCACACAGGTATACGGTTTCTATGACGAATGCCTTCGGAAATATGGTTCAGTAAATGTTTGGAGATATTGCACTGACATATTCGATTACTTAAGCTTGTCTGCTCTAATTGAAAACAAGATTTTCAGTGTTCATGGTGGCCTCTCTCCTGCCATTACAACTTTGGATCAGATACGAACTATTGATAGAAAGCAAGAGGTACCTCATGATGGTGCCATGTGTGACCTCCTATGGTCAGATCCTGAAGATATTGTAGATGGATGGGGTCTGAGTCCCCGTGGTGCTGGTTTCTTGTTTGGCGGTAGCGTTGTCTCTTCTTTTAACCACACCAATAACATTGACTATATTTGCCGAGCTCATCAGTTGGTAATGGAAGGTTATAAATGGATGTTCAATAACCAGATAGTTACTGTCTGGTCAGCTCCAAATTATTGCTACAGATGTGGTAATGTAGCTGCAATTTTGGAATTAGACGGTAATCTTAATAAGCAGTTTCGTGTGTTTGAGGCTGCCCCTCAGGACTCAAGAGGTGCACCTGCCAAGAAACCAGCACCAGATTACTTCCTATAA 918 0.4248 MSDLDRQIEQLKRCEPLKESEVKALCLKAIEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAITTLDQIRTIDRKQEVPHDGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGSVVSSFNHTNNIDYICRAHQLVMEGYKWMFNNQIVTVWSAPNYCYRCGNVAAILELDGNLNKQFRVFEAAPQDSRGAPAKKPAPDYFL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03369 305 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 2 305 IPR047129 GO:0004722
Vifa1g03369 305 PRINTS Serine/threonine phosphatase family signature 228 248 IPR006186 GO:0016787
Vifa1g03369 305 PRINTS Serine/threonine phosphatase family signature 142 168 IPR006186 GO:0016787
Vifa1g03369 305 PRINTS Serine/threonine phosphatase family signature 171 198 IPR006186 GO:0016787
Vifa1g03369 305 PRINTS Serine/threonine phosphatase family signature 74 101 IPR006186 GO:0016787
Vifa1g03369 305 PRINTS Serine/threonine phosphatase family signature 107 131 IPR006186 GO:0016787
Vifa1g03369 305 PRINTS Serine/threonine phosphatase family signature 250 266 IPR006186 GO:0016787
Vifa1g03369 305 PRINTS Serine/threonine phosphatase family signature 45 72 IPR006186 GO:0016787
Vifa1g03369 305 ProSitePatterns Serine/threonine specific protein phosphatases signature. 108 113 IPR006186 GO:0016787
Vifa1g03369 305 SUPERFAMILY Metallo-dependent phosphatases 2 291 IPR029052 -
Vifa1g03369 305 SMART pp2a_7 17 288 IPR006186 GO:0016787
Vifa1g03369 305 CDD MPP_PP2A_PP4_PP6 3 288 - -
Vifa1g03369 305 FunFam Serine/threonine-protein phosphatase 1 305 - -
Vifa1g03369 305 Pfam Calcineurin-like phosphoesterase 45 237 IPR004843 GO:0016787
Vifa1g03369 305 Gene3D - 1 305 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03369 Vifa-Chr1 526437187 526441581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03369 24 223 Calmodulin-binding Proteins AT5G63870 37.190 2.38e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03369 K15423 - qsu:112031896 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03369 1 526437187 526441581 Vifa1g03369 1 526437187 526441581 ECH