Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03367 ATGTCTCTTCAAATATCAATGATGTTTCTCTTAGTATTGTTTATGAGTTATTTTTTTCTTGGTAGAGCCATAGATTGTGGTGGTAATCAAGTTGCAAACACCATAATTGTTGATCAAGGAGGAAAAGGAGCATTTAAAACAGTACAAGCTGCCATTGATTCTGTAAAAAATCCTAATGATCAATGGGTTCTCATTAAAATAAATCCTGGTGTATATGAGGAAAAAGTTCTTATACACCCAAGAAAACCATGCATTATTTTAAAAGGATCTGGTAATAATAACACAATCATTACCTACAATAGTGCAGCTAATGATATTGGCACATCTAATAGTGCAACATTTCATTCTTCTCCACCTAATGTAGTTTTGAGTGGCATTACATTCAAGAACACACATGGTACTGAAGGACCAGCAGTAGCAGCTTCAATATATGGTGATAAGACTGCAATTTTTGAATGTAGTTTCACTGGTTATCAAGATACTTTGCTTTCATCAAAGTGGCGTCAATATTTCAAAAATTGTTATGTTGAAGGTGAAGCCGACTTTATTTTTGGTGAAGGTCAATCTTATTTTGAGAATTGTAAGATCAATGCCACTCAAGCGGAGTCAAAACCGGTAGGTTTTGTCACCGCACAACGTAGAGATTCGCCGAATAGTCCAAATGGTTATGTTTTTAAAGGAGGACGCATAGATGGAAATGGTCAAGTGAATCTTGGTAGACCTTGGGGTCCTTACTCAAGAGTTATATTTTGGGAAACATATTTTTCATCTGTGGTAACTCCTCAAGGATGGGATCAGTGGAATTTAACGATCAGTGACGCGCAAAAGACTGTCTTTGCAGAAGTAAATTGTACAGGACCAGGGGCCAATACTGAGAAACGAGTTGGGTGGGAGAAGAAACCAAGTAGCTTAAACTTAAATGAATATAGTTTGTCAACTTTCATAAATAAGGATGGATGGCTTGATAATTTACCATCAATATAA 984 0.3608 MSLQISMMFLLVLFMSYFFLGRAIDCGGNQVANTIIVDQGGKGAFKTVQAAIDSVKNPNDQWVLIKINPGVYEEKVLIHPRKPCIILKGSGNNNTIITYNSAANDIGTSNSATFHSSPPNVVLSGITFKNTHGTEGPAVAASIYGDKTAIFECSFTGYQDTLLSSKWRQYFKNCYVEGEADFIFGEGQSYFENCKINATQAESKPVGFVTAQRRDSPNSPNGYVFKGGRIDGNGQVNLGRPWGPYSRVIFWETYFSSVVTPQGWDQWNLTISDAQKTVFAEVNCTGPGANTEKRVGWEKKPSSLNLNEYSLSTFINKDGWLDNLPSI 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03367 327 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 28 322 - -
Vifa1g03367 327 FunFam Pectinesterase 29 325 - -
Vifa1g03367 327 SUPERFAMILY Pectin lyase-like 31 323 IPR011050 -
Vifa1g03367 327 Gene3D - 28 325 IPR012334 -
Vifa1g03367 327 Pfam Pectinesterase 35 317 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03367 Vifa-Chr1 526413916 526415472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03367 10 268 Carbohydrate Esterase AT2G19150 42.910 1.15e-63 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03367 - - tpra:123922273 390.963