Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03365 ATGGACGATGTTTCGGTAGATCCTCCACCGGAGGTCGAGAACGGAGGAGGCGAACCATCGGAGGAACCGTGTAGCAAGAAGGCGAGGGTTGACGCAGTTGATAAACCGGAGGCGGAATTGAAACGAGTGGCGGAGATTGTTTTGGTTTTATCAACGATGGCGACGATGCGAGGTGGACAGAAGCCGACTGATGTGGAGGTTGAACTCATGAGAGAGGCGCGGAGTAAGCTCGCAATTCTCTGCCAGGGGATTGCTCCCAAGGATATTGTTGCTCGTGAAGCTATTGGTGCCGTTATTGAGGATCTCGGTTTGAATGCTAAGGTTGGGGACCAGAGGTTAGGGTTTCGTGCTCCTAAGATGTCCATTGCCGAGAAGTATGCCTTCAATAAATCGAAGATGGAGGAATCAAGGAAATTATTATCTGCATCTTCTACAACATATGCATCTCAACCCTTGCAAACAAACACCGATGGAATGGTTGACAATCATGTTCCAACAAATACTGTTCGAATGTTCTCGTCTGATAAATCAAACCACATGGCAGTAACTTCTTCAGTTTCGATGGTGTGTATTCCTCCCCATCTTTCTGCAGGATCTTCTGCAGCATTGCAATATCAATCAACCAGCAATGAAGTCAGACCACCCATTGTTTCTGGTGTAATGCCTAGCAGTCACATGGGGAGAAATCCATCTTCTGTAGCATTGCCTAGAGTTGAAAACCCACAGTTTAAAGTTACTGGAGGATTGAGTGGGGCTCCTTATGTGCTTCAGGTCCAAGCAAATTCATTGGCAAACCAATCACTGGTGAATGCTCCTACATGGTCAATACAGACTCATCCCGTGTCATTAGCTAGAAGCGTATCAGAAAACAAGGCGCCTGCTCATAATCCTCCCAAGGTGGAAGGAACTGCTGATGCAACCGTATTGAGGGCAGGTCCACAAGTAGCAACAGGTCAGAGCATTAGACCGTTTATTACTCAAACAGGACCTGGAAATATGTCTAGTATGCACCAGCCATTGCAGGGTGGGAACATGGTTCAACCTCCTTTGATTCCTAGTCACTCTGATATTGCAAAGATTGTCCAGAAATTGTTACTACCAAAGCTTCCGGAACATCGCACATGGACTCCTCCGTCAAGGGATTATATGAATAAAGCTTTCACATGTCAGACATGTGAGCTCACTGTCAGTGAGGTTGATTCTGTTCTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTAAAGTGCCTGCAGCCATCAGTAATCAGAGGAATTCATAATAGAGTTGATTGGCACTGCACGAGATGCTTGAGTTTAAGCGGCGGAAAGTCTTTGCCTCCAAAATATGGCCGCGTGACGAGATCTTCAATTACATCACCAAGTTTTCCCTCTAATACAGTTGGTATTCAACCATCTTCAGAAAAGAAAGCAGATAGCTTAGATCTAAAGATACAAGAGATATACAAGGGTGAAAGTTGCGCTGAACAAATAGATTCAAAGGCTTTGATCTGTAAAGATACAGCTGAATCAGAAACTCCTCCTAAATTATCCGAGCCGGCTAAATGTGAAAATTTGCAATCATCACAAGATTCTCAAGTTGAGATGGCAGTATCAAAGGACACTGCTGAAATATCACCAGATAGACATGATAGCAGTAGTTTTATGACTAGTAGTCAAAAGGAATCTCATGGAGGAGAAAATATAACTAACAATATCAAGCGCGATGATCTAGATGTTGAACCAATTTCTGTTGGAAGTTCTGGAACTAATACTGAAGATGAGAAAAAGTATTACCAATCTTGCTGCATTGATGGAGTAACATATAGGGTGCATGGTCATGCTTTTTTCACATCTAACCATGGCAAACTGACACCTTCTAAACTTCAGTCCATGTGGGAAGATTCCAAAACTGGGATGAAGTGGGTAAAGGCAACGAAGTGCTACTTTCCTGATGATTTGCCGGGAAATATTGGTCATCCTTGTATATCTGAAGTCAACGAGTTCCAATTGGGTTCAGAGCTCACATTGGTGGGGCCTGATAAAACTGTAGTGTCCCAAACCAGAAACCCTACCACCAAGGTTGGGACGTCAGCAGCACTAGTTCCAAATCATATGATGATATATTCATTTCGTTATTTCTCCTGTGTAAGTAATCCCTAA 2160 0.4361 MDDVSVDPPPEVENGGGEPSEEPCSKKARVDAVDKPEAELKRVAEIVLVLSTMATMRGGQKPTDVEVELMREARSKLAILCQGIAPKDIVAREAIGAVIEDLGLNAKVGDQRLGFRAPKMSIAEKYAFNKSKMEESRKLLSASSTTYASQPLQTNTDGMVDNHVPTNTVRMFSSDKSNHMAVTSSVSMVCIPPHLSAGSSAALQYQSTSNEVRPPIVSGVMPSSHMGRNPSSVALPRVENPQFKVTGGLSGAPYVLQVQANSLANQSLVNAPTWSIQTHPVSLARSVSENKAPAHNPPKVEGTADATVLRAGPQVATGQSIRPFITQTGPGNMSSMHQPLQGGNMVQPPLIPSHSDIAKIVQKLLLPKLPEHRTWTPPSRDYMNKAFTCQTCELTVSEVDSVLLCDACEKGFHLKCLQPSVIRGIHNRVDWHCTRCLSLSGGKSLPPKYGRVTRSSITSPSFPSNTVGIQPSSEKKADSLDLKIQEIYKGESCAEQIDSKALICKDTAESETPPKLSEPAKCENLQSSQDSQVEMAVSKDTAEISPDRHDSSSFMTSSQKESHGGENITNNIKRDDLDVEPISVGSSGTNTEDEKKYYQSCCIDGVTYRVHGHAFFTSNHGKLTPSKLQSMWEDSKTGMKWVKATKCYFPDDLPGNIGHPCISEVNEFQLGSELTLVGPDKTVVSQTRNPTTKVGTSAALVPNHMMIYSFRYFSCVSNP 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03365 719 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g03365 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 437 IPR013083 -
Vifa1g03365 719 MobiDBLite consensus disorder prediction 521 538 - -
Vifa1g03365 719 MobiDBLite consensus disorder prediction 510 573 - -
Vifa1g03365 719 ProSiteProfiles Zinc finger PHD-type profile. 386 439 IPR019787 -
Vifa1g03365 719 Pfam PHD-finger 389 437 IPR019787 -
Vifa1g03365 719 ProSitePatterns Zinc finger PHD-type signature. 389 436 IPR019786 -
Vifa1g03365 719 Gene3D - 579 667 IPR043151 -
Vifa1g03365 719 SUPERFAMILY FYVE/PHD zinc finger 379 440 IPR011011 -
Vifa1g03365 719 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 5 484 - -
Vifa1g03365 719 SMART PHD_3 388 437 IPR001965 -
Vifa1g03365 719 MobiDBLite consensus disorder prediction 548 566 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa1g03365 PHD 1.6e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03365 - - gmx:100807139 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03365 1 525743692 525747948 Vifa1g03365 1 525743692 525747948 ECH