Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03363 ATGTTGAATCAAGCGAGGAGTAAAGGAAAAGATATTCAGGACCTGAAGTTTGAGATTGAAGTTATTGCTAAAGAGATTAATGATAAATATGGTGATAAGAAATCTGGGTATATGCCAATTCTTTGCGTAAATGGGCATGTTTTAACTCAGGAGAAGGCTGCATATTATGCTATATCAGAATGTTGTATCGTAAATATTGTGAGGGATGGGATGAATCCTTATGAGTATATTGTTTGCAGACAAGGAAGTGTTGAATTGGACAAAGCACTGGGGGTGGAGAATGATGAGGCTAAAAAGAGTGTTATCATTATTTTTGAGTTCATTGATTATTCTCCTTCGCTCACTTGCACGATTCGGGTGAATCCGTGGAACATTAATGATGTTTGTGAAGCAATGAAATCAACAATTAGAATGGAGGATGCTGAGAAGCAATTGAGACACGAGAAGAATTATAAGTATATAAGCTCTCCTGATGTAGCTTATTGGGCTAAGAGTTTTGATCAAGTTTTGGAGAGAGCTTGTAGGGAGCATTATGTGAAGAAGTGGTTGGATGTTGGATTAGGACTCAATTTTAGAATGATTTCTTTAGATCCTAGTTTTGAGAAGCTTTATGTTGACTACATTGTCTCTGCTTATAGAGATACAAAGAGTAGGTTGATCCTTTTGGATTATGATGGTAGCATGATGCCTCAGGGATCACTAGACAAAACCCCTTGCTTGGATGTTATCTCTCTCTTGAATAGCTTATGTGGTGATCCCAAAAATGTAGTTTTCATTGTTAGTGGCAGGGATAGAGAATGCCTTAGCAAGTGGTGTTCTTCCTGTGACAAACTTGGTCTCTCTGTCGAACATGTTTACTTCACTAGGTAG 870 0.3782 MLNQARSKGKDIQDLKFEIEVIAKEINDKYGDKKSGYMPILCVNGHVLTQEKAAYYAISECCIVNIVRDGMNPYEYIVCRQGSVELDKALGVENDEAKKSVIIIFEFIDYSPSLTCTIRVNPWNINDVCEAMKSTIRMEDAEKQLRHEKNYKYISSPDVAYWAKSFDQVLERACREHYVKKWLDVGLGLNFRMISLDPSFEKLYVDYIVSAYRDTKSRLILLDYDGSMMPQGSLDKTPCLDVISLLNSLCGDPKNVVFIVSGRDRECLSKWCSSCDKLGLSVEHVYFTR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03363 289 Pfam Trehalose-phosphatase 221 289 IPR003337 GO:0003824|GO:0005992
Vifa1g03363 289 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 175 - -
Vifa1g03363 289 Gene3D - 217 289 IPR023214 -
Vifa1g03363 289 Gene3D Glycogen Phosphorylase B; 1 155 - -
Vifa1g03363 289 Pfam Glycosyltransferase family 20 3 171 IPR001830 GO:0003824|GO:0005992
Vifa1g03363 289 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 3 289 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03363 Vifa-Chr1 525712405 525713274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03363 1 289 Trehalose Biosynthesis Gene Families AT2G18700 59.450 2.55e-116 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03363 K16055 - gmx:100810498 408.297