Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03361 ATGTCACTAAACCAAGAGCCGATGATAGCTCAACTTGAGACAGTATCTGACTGGATTACAAAATTAGAATACCTTCAATCACTGAAACTGAAATCTAGAGATGAAAAAGGTCGACCTTGGACTTTACACATGAAATCCTTCGAAAATAATGCATATCTCACGGACATGTATTTGCTGGGAAGCTTGAGCAGTTCATCTATTGTGTCCCAATTTCCACTAAGCCTAGTTGAACTTAACCTATCACATTCAAAACTACAGGATGATCCCATGATACTTTTGAAAGATTTTCCAAATCTTCAAACACTTTGTTTACTTGCAGAGTCATACACGGGAACAACTATGAAACTACATAGTCAGCAGCCTCAGCATTTGGTCAATGACGATGGTTTCAATCAGTCTCAGTTGTCTTCCAATCTAGAAAACCAAGTGAAGATAGAGCCTGGAATTGAACACGATAAAGAAGTGCTCAATTCTCATGTTCCTGAACAGTTCCATATGTCTGAGATGCAGAATCAGTTCCAGCAAAATTCCTCTGAAGAATGTTCTAGGAGTGCTCAATACCTTTCCTTTCCATCAGGTCAGCACGATTTATCGTCATCAGCACCTCAAAATTTGCAACAAATGTTGCATCCACACCAATTAGTTGCAGAATATCAAAATAAGTTCAGCTGTCTTACAGTTGGTGCACAATCCAATTCTAAACCAGTAGTTCTAAACCAATGGCCTGACTCACAAGATGGTAACCACATGTCTAACAATATTTCACACGACCAGCATCTCCATGTGGATTTTCATCAAAGAATATCAAGAAAGGATGAAGATCATTGCAATAACTTATCATCAGATGTATCTATGAGCCAAGCTGTTGCTCCTAGAGGCGCAGCTGATCCACCAGACCCAGGAAGTGATCTCAAAAATGCGCACAAAAATCAACAAAGGTGGCTCTTATTTCTACTTCATGCGCGACGATGTTCTGCTCCTGAAGGACGATGCCAAGAACGTTGTTGTTCTAGTGCACAGAATTTATGCAAGCACATAGATGGATGCACCCTAGGTCGTCATTGTCCATACCCGCGTTGTCATCATAATAGGGTATTGCTTCGTCATTTCATGCACTGCAAGGATCCGTGTTGCCCTGTTTGTGTTTTTGTAAGAAATTACCGGCGCGCATTTCAACTTAAATCTCAGATTCAGCCAGAATCTCAATCAAGTTTGCCAAGTGTGGTAAATGGATCGTGTAAATCTTACAATATTACAGCTATGTCATCCAGATTGATCTCAAATCCTACATTAGTTGTGGAAACTTCAGAAGGCTTGCACCCATCTCTAAAACGCATAAAAAAAACTGAGCTGCACACTAATACAAACGCTAGTAATCAACACAAGACTAAGCTTGGTGGGAAAGCTGAAACTTCAAAATGGAAATTTATCTAA 1434 0.3989 MSLNQEPMIAQLETVSDWITKLEYLQSLKLKSRDEKGRPWTLHMKSFENNAYLTDMYLLGSLSSSSIVSQFPLSLVELNLSHSKLQDDPMILLKDFPNLQTLCLLAESYTGTTMKLHSQQPQHLVNDDGFNQSQLSSNLENQVKIEPGIEHDKEVLNSHVPEQFHMSEMQNQFQQNSSEECSRSAQYLSFPSGQHDLSSSAPQNLQQMLHPHQLVAEYQNKFSCLTVGAQSNSKPVVLNQWPDSQDGNHMSNNISHDQHLHVDFHQRISRKDEDHCNNLSSDVSMSQAVAPRGAADPPDPGSDLKNAHKNQQRWLLFLLHARRCSAPEGRCQERCCSSAQNLCKHIDGCTLGRHCPYPRCHHNRVLLRHFMHCKDPCCPVCVFVRNYRRAFQLKSQIQPESQSSLPSVVNGSCKSYNITAMSSRLISNPTLVVETSEGLHPSLKRIKKTELHTNTNASNQHKTKLGGKAETSKWKFI 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03361 477 SUPERFAMILY TAZ domain 307 388 IPR035898 -
Vifa1g03361 477 MobiDBLite consensus disorder prediction 451 477 - -
Vifa1g03361 477 PANTHER CBP/P300-RELATED 119 463 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vifa1g03361 477 Gene3D TAZ domain 301 389 IPR035898 -
Vifa1g03361 477 ProSiteProfiles Zinc finger TAZ-type profile. 302 384 IPR000197 -
Vifa1g03361 477 Pfam TAZ zinc finger 312 381 IPR000197 -
Vifa1g03361 477 SUPERFAMILY RNI-like 12 113 - -
Vifa1g03361 477 SMART TAZ_2 305 384 IPR000197 -
Vifa1g03361 477 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03361 Vifa-Chr1 525593751 525595467 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vifa1g03361 zf-TAZ 8.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03361 K04498 - gmx:100787114 485.723