Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03359 ATGTTGCATCCACACCAATTAGTTGCAGAATATCAAAATAAGTTCAGCTGTCTTACAGTTGGTGCACAATCCAATTCTAAACCAGTAGTTCTAAACCAATGGCCTGACTCACAAGATGGTAACCACATGTCTAACAATATTTCACACGACCAACATCTCCATGTGGATTTTCATCAAAGAATATCAGGAAAGGATGAAGATTATTGCAATAACTTATCATCAGATGTATCTATGAGCCAGGCTGTTGCTCCTAGAGGCGCATCTGATCCACCAGACCCAGGAAGTGATATCAAAAATACGCATAAAAATCAACAAAGGTGGCTCTTATTTCTACTTCATGCGCGACGATGTTCTGCTCCTGAAGGACGATGCCAAGAACGCTGTTGTTCTAGTGCACAGAATTTATGCAAGCACATAGATGTATGCACCCTAGGTCGTCATTGTCCATACCCGCGTTGTCATCATAATAGGGTATTGCTTCGTCATTTCATGCACTGCAAGGATCCGTGTTGCCCTGTTTGTGTTTTTGTAAGAAATTACCGGCGCGCATTTCAACTTAAAGCTCAGATTCAGCCAGAATCTCAATCAAGTTTGCCAAGTGTGGTAAATGGATCGTGTAAATCTTACAATATTACAGCTATGTCATCCAGATTGATCTCAAATCCTACATTAGTTGTGGAAACTTCAGAAGGCTTGCACCCATCTCTAAAACGCATAAAAAAAACTGAGTTGCACACTAATACAAACGCTAGTAATCAACACAAGACTAAGCTTGGTGGGAAAGCTGAAACTTCAAAATGGCAATTTATCTAA 813 0.4022 MLHPHQLVAEYQNKFSCLTVGAQSNSKPVVLNQWPDSQDGNHMSNNISHDQHLHVDFHQRISGKDEDYCNNLSSDVSMSQAVAPRGASDPPDPGSDIKNTHKNQQRWLLFLLHARRCSAPEGRCQERCCSSAQNLCKHIDVCTLGRHCPYPRCHHNRVLLRHFMHCKDPCCPVCVFVRNYRRAFQLKAQIQPESQSSLPSVVNGSCKSYNITAMSSRLISNPTLVVETSEGLHPSLKRIKKTELHTNTNASNQHKTKLGGKAETSKWQFI 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03359 270 MobiDBLite consensus disorder prediction 244 270 - -
Vifa1g03359 270 ProSiteProfiles Zinc finger TAZ-type profile. 95 177 IPR000197 -
Vifa1g03359 270 SMART TAZ_2 98 177 IPR000197 -
Vifa1g03359 270 Gene3D TAZ domain 94 182 IPR035898 -
Vifa1g03359 270 PANTHER CBP/P300-RELATED 46 256 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vifa1g03359 270 SUPERFAMILY TAZ domain 99 181 IPR035898 -
Vifa1g03359 270 MobiDBLite consensus disorder prediction 80 99 - -
Vifa1g03359 270 Pfam TAZ zinc finger 105 174 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03359 Vifa-Chr1 525570926 525571738 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vifa1g03359 zf-TAZ 8.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03359 K04498 - gmx:100809207 355.14