Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g03358 | ATGTTCGGATCCAACGCTAAACTCTTACCACAAGATGAAGTGAAATTGCTACAAACAATATCGGACAAGTTAGGAAACTTGAATTGGAAGGTTACACAAGGTTCTTGCAATGATGATAATGGATTTGGTAACAAGAATATTTCGAAGGATATTTTAAGCAGTGTCACATGTGTTTGTACTTTCAATTCTAGCACTGTTTGCCATGTCACAAATATCTTGCTCAAGGGTCTGAATATATCTGGAGTTATTCCAAGTGAATTTGGAAATCTCACTCAACTCAAAGTACTTGATCTCTCTAGGAATTATTTAAATGGTTCCATTCCAAACACTCTTGGAGTCCTCTCACTTGTGACATTGGCATTTTTGGGAAATCAACTTAGTGGTCCAATTCCCTCAGAAATTGGTAATATTGCAACCCTGCAAGAACTGACCTTAGAGGATAATCTACTTGAAGGACCTCTTCCTCCAAGCCTTGGAAATTTGAAACACTTGGAGGATTTAAAGCTTTCTGCAAATAATTTTACAGGGGCAATACCAGAATCATATGGAAATCTAAAGAATCTAACTGATTTTAGGATAGACGGAAGTAGTTTATCTGGGAAGATTCCGAGTTTTATTGGAAACTGGACAAAACTTGAAAGATTAGATTTACAAGGCACGTCGATGGAAGGTCCAATTCCTCCTGCGATATCTCTCTTGAAAAGTTTGAAGGAATTGAGAATATCTGATTTGAAGGGGAACACAACCATGGCATTTCCTGATCTGAAAAATTTGACACGCATGACAAAACTGGAATTGAGAAATTGCTTAATCACTGGTCCTATTTTAGACTCTATCGGTGAAATGGAAAATTTAAAAACACTAGATTTGAGCTCCAATAGATTGACGGGTCCAATTCCAGATTCATTTGAGAATTTAGAAAATATCAATTTCATGTTTCTGACGAACAACTCTCTAAGTGGAACAACTCCCGGATGGATATTGACCAACAAACAGAACTTTGATTTATCTTTCAACAATTTTTCCGAGTCTTCTGCGACTACTTGCCAGCCCTTGGACGTGAACTTAGCCTCCAGTGTCTCTTCTTCCGCAAACACTTCACTGTCTTGTTTGAAGGCGAACCTACCTTGTTCGGGAAAATCTCAGTATCATTCACTGTTCATAAATTGTGGAGGACCTGCGATTGGGGTTGATGACAAAGACTATGAAGCCGACGAACTTTTACGTGGAATTTCGAACTTTGTTCAGAGTGCTGATGGAAAGTGGGCTTATAGCAGCACAGGAGTATTTCTAGGAAATGAAAAAGCTGATTATGTGGGAAATTATAATGTGAAACTTCATTTTGCTGAGATAATGTTTTCTAATGACCGGACTTTTAGCAGCCTTGGAAGGCGCATATTTGATGTTTCAATTCAAGGTCATAAATATTTAAAAGACTTCAACATTATGGAAGAAGCCGGTGGAGTTGGCAAGGAAATTAGTCGAGACTTCAATGTTGATGTTAATGATAGCACCTTGCAAATCCACTTGTCATGGGCAGGAAAAGGAACTAATGCAGTTCCTATGCGAGGTGTATATGGACCTCTTATATCTGCTATCACCGTGACCCCGAACTTTAAAATTCCTTCGAATGGGTTGTCTGCTGGAGCAATTGCTGGAATTGTGATTGGATCATTGGCATTTGTTTTGCTGATACTCTTTGTCCTTTGGAAGACGGGTTACATTTTTCGGAAAGATCAAACAGACAAAGAACTTCTAGAATTGAAAACAGGTTATTTCAGTTTGAGACAAATTAAAGCTGCTACTAATAACTTCGATCCAGAAAATAAGATAGGTGAAGGAGGATTTGGGCCAGTTTACAAGGGTATACTGTCAGATGGTGCTGTGATTGCTGTTAAACAGCTCTCGTCCAAATCAAAGCAAGGGAACCGCGAATTCGTAAACGAAATAGGCATGATATCTGCTTTGCAGCATCCCAATCTTGTGAAACTTTATGGATGTTGCATTGAAGGAAACCAATTGCTGCTTGTATATGAATACATGGAGAACAATAGTCTTGCTCGCGCTATTTTCGGTAAGCCCGAACAAAAGTTGAACTTGGACTGGCGCACGAGGATGAAGATTTGTGTAGGGATAGCAAGAGGTTTAGCCTATCTTCATGAGGAATCAAGGTTGAAAATAGTACACAGAGATATTAAAGCAACTAATGTTTTACTTGATAAGCATCTGAATGCCAAGATCTCTGATTTCGGTTTAGCCAAGCTCGATGAAGAAGAAAACACTCATATCAGCACGCGAATAGCTGGGACAATAGGCTACATGGCTCCTGAGTATGCTATGCGGGGTTACTTGACGGACAAAGCAGATGTATATAGTTTCGGAGTTGTAGCTTTGGAGATTGTAAGTGGAATGAGCAACACAAATTATAGGCCAAAAGAGGAATTTGTTTATCTTCTGGACTGGGCCTATGTTCTCCAAGAACAAGGAAACCTTCTAGAGTTGGTGGATCCGAGTCTTGGTTCAAACTACTCAGCAGAAGAGGCCATGAGAATGCTGCAATTGGCACTCCTTTGCACCAATCCATCTCCAACTCTTAGACCACCAATGTCATCTGTAGTGAGCATGCTTGAAGGAAACACTCCAATTCAAGCGCCGATAATCAAGCGAAGCGATAGTACACGTGGCGCAAGATTTAAAGCCTTTGAGCTTCTATCACATGATAGCCAAACTAATGTTTCTTCAACATCCTTACAAGATAGTAGAGAGCTAAGAGGCAAATCAATGGATGGACCATGGGTTGATTCTTCCATATCTTATCCAAGTAAAGATGATTATTCTTCATCTGATAGGCTTATTTGA | 2859 | 0.3952 | MFGSNAKLLPQDEVKLLQTISDKLGNLNWKVTQGSCNDDNGFGNKNISKDILSSVTCVCTFNSSTVCHVTNILLKGLNISGVIPSEFGNLTQLKVLDLSRNYLNGSIPNTLGVLSLVTLAFLGNQLSGPIPSEIGNIATLQELTLEDNLLEGPLPPSLGNLKHLEDLKLSANNFTGAIPESYGNLKNLTDFRIDGSSLSGKIPSFIGNWTKLERLDLQGTSMEGPIPPAISLLKSLKELRISDLKGNTTMAFPDLKNLTRMTKLELRNCLITGPILDSIGEMENLKTLDLSSNRLTGPIPDSFENLENINFMFLTNNSLSGTTPGWILTNKQNFDLSFNNFSESSATTCQPLDVNLASSVSSSANTSLSCLKANLPCSGKSQYHSLFINCGGPAIGVDDKDYEADELLRGISNFVQSADGKWAYSSTGVFLGNEKADYVGNYNVKLHFAEIMFSNDRTFSSLGRRIFDVSIQGHKYLKDFNIMEEAGGVGKEISRDFNVDVNDSTLQIHLSWAGKGTNAVPMRGVYGPLISAITVTPNFKIPSNGLSAGAIAGIVIGSLAFVLLILFVLWKTGYIFRKDQTDKELLELKTGYFSLRQIKAATNNFDPENKIGEGGFGPVYKGILSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARAIFGKPEQKLNLDWRTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKHLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGMSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSNYSAEEAMRMLQLALLCTNPSPTLRPPMSSVVSMLEGNTPIQAPIIKRSDSTRGARFKAFELLSHDSQTNVSSTSLQDSRELRGKSMDGPWVDSSISYPSKDDYSSSDRLI | 952 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g03358 | 952 | ProSiteProfiles | Leucine-rich repeat profile. | 284 | 306 | IPR001611 | GO:0005515 | |
Vifa1g03358 | 952 | Gene3D | Phosphorylase Kinase; domain 1 | 571 | 680 | - | - | |
Vifa1g03358 | 952 | FunFam | probable LRR receptor-like serine/threonine-protein kinase At1g53430 | 576 | 680 | - | - | |
Vifa1g03358 | 952 | SMART | serkin_6 | 605 | 874 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g03358 | 952 | SUPERFAMILY | L domain-like | 42 | 349 | - | - | |
Vifa1g03358 | 952 | Gene3D | Ribonuclease Inhibitor | 248 | 355 | IPR032675 | - | |
Vifa1g03358 | 952 | CDD | STKc_IRAK | 611 | 878 | - | - | |
Vifa1g03358 | 952 | MobiDBLite | consensus disorder prediction | 911 | 952 | - | - | |
Vifa1g03358 | 952 | ProSiteProfiles | Protein kinase domain profile. | 605 | 887 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g03358 | 952 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 17 | 908 | - | - | |
Vifa1g03358 | 952 | Pfam | Leucine rich repeat | 260 | 319 | IPR001611 | GO:0005515 | |
Vifa1g03358 | 952 | Pfam | Leucine Rich Repeat | 92 | 114 | IPR001611 | GO:0005515 | |
Vifa1g03358 | 952 | PRINTS | Leucine-rich repeat signature | 282 | 295 | - | - | |
Vifa1g03358 | 952 | PRINTS | Leucine-rich repeat signature | 93 | 106 | - | - | |
Vifa1g03358 | 952 | SUPERFAMILY | Protein kinase-like (PK-like) | 588 | 877 | IPR011009 | - | |
Vifa1g03358 | 952 | Pfam | Malectin domain | 386 | 533 | IPR021720 | - | |
Vifa1g03358 | 952 | Gene3D | Ribonuclease Inhibitor | 15 | 141 | IPR032675 | - | |
Vifa1g03358 | 952 | Gene3D | - | 383 | 538 | - | - | |
Vifa1g03358 | 952 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase isoform A | 178 | 245 | - | - | |
Vifa1g03358 | 952 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 681 | 888 | - | - | |
Vifa1g03358 | 952 | FunFam | Probable LRR receptor-like serine/threonine-protein kinase At1g53440 | 13 | 177 | - | - | |
Vifa1g03358 | 952 | Pfam | Protein tyrosine and serine/threonine kinase | 608 | 875 | IPR001245 | GO:0004672|GO:0006468 | |
Vifa1g03358 | 952 | Gene3D | Transferase(Phosphotransferase) domain 1 | 681 | 890 | - | - | |
Vifa1g03358 | 952 | SMART | LRR_typ_2 | 282 | 305 | IPR003591 | - | |
Vifa1g03358 | 952 | SMART | LRR_typ_2 | 90 | 114 | IPR003591 | - | |
Vifa1g03358 | 952 | SMART | LRR_typ_2 | 161 | 184 | IPR003591 | - | |
Vifa1g03358 | 952 | SMART | LRR_typ_2 | 328 | 351 | IPR003591 | - | |
Vifa1g03358 | 952 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 727 | 739 | IPR008271 | GO:0004672|GO:0006468 | |
Vifa1g03358 | 952 | Gene3D | Ribonuclease Inhibitor | 145 | 247 | IPR032675 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g03358 | Vifa-Chr1 | 525545851 | 525555955 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g03358 | 1 | 943 | Receptor kinase-like Gene Family | AT1G53440 | 62.525 | 0.0 | 1198 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Vifa1g03358 | PK_Tyr_Ser-Thr | 2.4e-49 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g03358 | - | - | gmx:121173337 | 1436.78 |