Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03358 ATGTTCGGATCCAACGCTAAACTCTTACCACAAGATGAAGTGAAATTGCTACAAACAATATCGGACAAGTTAGGAAACTTGAATTGGAAGGTTACACAAGGTTCTTGCAATGATGATAATGGATTTGGTAACAAGAATATTTCGAAGGATATTTTAAGCAGTGTCACATGTGTTTGTACTTTCAATTCTAGCACTGTTTGCCATGTCACAAATATCTTGCTCAAGGGTCTGAATATATCTGGAGTTATTCCAAGTGAATTTGGAAATCTCACTCAACTCAAAGTACTTGATCTCTCTAGGAATTATTTAAATGGTTCCATTCCAAACACTCTTGGAGTCCTCTCACTTGTGACATTGGCATTTTTGGGAAATCAACTTAGTGGTCCAATTCCCTCAGAAATTGGTAATATTGCAACCCTGCAAGAACTGACCTTAGAGGATAATCTACTTGAAGGACCTCTTCCTCCAAGCCTTGGAAATTTGAAACACTTGGAGGATTTAAAGCTTTCTGCAAATAATTTTACAGGGGCAATACCAGAATCATATGGAAATCTAAAGAATCTAACTGATTTTAGGATAGACGGAAGTAGTTTATCTGGGAAGATTCCGAGTTTTATTGGAAACTGGACAAAACTTGAAAGATTAGATTTACAAGGCACGTCGATGGAAGGTCCAATTCCTCCTGCGATATCTCTCTTGAAAAGTTTGAAGGAATTGAGAATATCTGATTTGAAGGGGAACACAACCATGGCATTTCCTGATCTGAAAAATTTGACACGCATGACAAAACTGGAATTGAGAAATTGCTTAATCACTGGTCCTATTTTAGACTCTATCGGTGAAATGGAAAATTTAAAAACACTAGATTTGAGCTCCAATAGATTGACGGGTCCAATTCCAGATTCATTTGAGAATTTAGAAAATATCAATTTCATGTTTCTGACGAACAACTCTCTAAGTGGAACAACTCCCGGATGGATATTGACCAACAAACAGAACTTTGATTTATCTTTCAACAATTTTTCCGAGTCTTCTGCGACTACTTGCCAGCCCTTGGACGTGAACTTAGCCTCCAGTGTCTCTTCTTCCGCAAACACTTCACTGTCTTGTTTGAAGGCGAACCTACCTTGTTCGGGAAAATCTCAGTATCATTCACTGTTCATAAATTGTGGAGGACCTGCGATTGGGGTTGATGACAAAGACTATGAAGCCGACGAACTTTTACGTGGAATTTCGAACTTTGTTCAGAGTGCTGATGGAAAGTGGGCTTATAGCAGCACAGGAGTATTTCTAGGAAATGAAAAAGCTGATTATGTGGGAAATTATAATGTGAAACTTCATTTTGCTGAGATAATGTTTTCTAATGACCGGACTTTTAGCAGCCTTGGAAGGCGCATATTTGATGTTTCAATTCAAGGTCATAAATATTTAAAAGACTTCAACATTATGGAAGAAGCCGGTGGAGTTGGCAAGGAAATTAGTCGAGACTTCAATGTTGATGTTAATGATAGCACCTTGCAAATCCACTTGTCATGGGCAGGAAAAGGAACTAATGCAGTTCCTATGCGAGGTGTATATGGACCTCTTATATCTGCTATCACCGTGACCCCGAACTTTAAAATTCCTTCGAATGGGTTGTCTGCTGGAGCAATTGCTGGAATTGTGATTGGATCATTGGCATTTGTTTTGCTGATACTCTTTGTCCTTTGGAAGACGGGTTACATTTTTCGGAAAGATCAAACAGACAAAGAACTTCTAGAATTGAAAACAGGTTATTTCAGTTTGAGACAAATTAAAGCTGCTACTAATAACTTCGATCCAGAAAATAAGATAGGTGAAGGAGGATTTGGGCCAGTTTACAAGGGTATACTGTCAGATGGTGCTGTGATTGCTGTTAAACAGCTCTCGTCCAAATCAAAGCAAGGGAACCGCGAATTCGTAAACGAAATAGGCATGATATCTGCTTTGCAGCATCCCAATCTTGTGAAACTTTATGGATGTTGCATTGAAGGAAACCAATTGCTGCTTGTATATGAATACATGGAGAACAATAGTCTTGCTCGCGCTATTTTCGGTAAGCCCGAACAAAAGTTGAACTTGGACTGGCGCACGAGGATGAAGATTTGTGTAGGGATAGCAAGAGGTTTAGCCTATCTTCATGAGGAATCAAGGTTGAAAATAGTACACAGAGATATTAAAGCAACTAATGTTTTACTTGATAAGCATCTGAATGCCAAGATCTCTGATTTCGGTTTAGCCAAGCTCGATGAAGAAGAAAACACTCATATCAGCACGCGAATAGCTGGGACAATAGGCTACATGGCTCCTGAGTATGCTATGCGGGGTTACTTGACGGACAAAGCAGATGTATATAGTTTCGGAGTTGTAGCTTTGGAGATTGTAAGTGGAATGAGCAACACAAATTATAGGCCAAAAGAGGAATTTGTTTATCTTCTGGACTGGGCCTATGTTCTCCAAGAACAAGGAAACCTTCTAGAGTTGGTGGATCCGAGTCTTGGTTCAAACTACTCAGCAGAAGAGGCCATGAGAATGCTGCAATTGGCACTCCTTTGCACCAATCCATCTCCAACTCTTAGACCACCAATGTCATCTGTAGTGAGCATGCTTGAAGGAAACACTCCAATTCAAGCGCCGATAATCAAGCGAAGCGATAGTACACGTGGCGCAAGATTTAAAGCCTTTGAGCTTCTATCACATGATAGCCAAACTAATGTTTCTTCAACATCCTTACAAGATAGTAGAGAGCTAAGAGGCAAATCAATGGATGGACCATGGGTTGATTCTTCCATATCTTATCCAAGTAAAGATGATTATTCTTCATCTGATAGGCTTATTTGA 2859 0.3952 MFGSNAKLLPQDEVKLLQTISDKLGNLNWKVTQGSCNDDNGFGNKNISKDILSSVTCVCTFNSSTVCHVTNILLKGLNISGVIPSEFGNLTQLKVLDLSRNYLNGSIPNTLGVLSLVTLAFLGNQLSGPIPSEIGNIATLQELTLEDNLLEGPLPPSLGNLKHLEDLKLSANNFTGAIPESYGNLKNLTDFRIDGSSLSGKIPSFIGNWTKLERLDLQGTSMEGPIPPAISLLKSLKELRISDLKGNTTMAFPDLKNLTRMTKLELRNCLITGPILDSIGEMENLKTLDLSSNRLTGPIPDSFENLENINFMFLTNNSLSGTTPGWILTNKQNFDLSFNNFSESSATTCQPLDVNLASSVSSSANTSLSCLKANLPCSGKSQYHSLFINCGGPAIGVDDKDYEADELLRGISNFVQSADGKWAYSSTGVFLGNEKADYVGNYNVKLHFAEIMFSNDRTFSSLGRRIFDVSIQGHKYLKDFNIMEEAGGVGKEISRDFNVDVNDSTLQIHLSWAGKGTNAVPMRGVYGPLISAITVTPNFKIPSNGLSAGAIAGIVIGSLAFVLLILFVLWKTGYIFRKDQTDKELLELKTGYFSLRQIKAATNNFDPENKIGEGGFGPVYKGILSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARAIFGKPEQKLNLDWRTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKHLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGMSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSNYSAEEAMRMLQLALLCTNPSPTLRPPMSSVVSMLEGNTPIQAPIIKRSDSTRGARFKAFELLSHDSQTNVSSTSLQDSRELRGKSMDGPWVDSSISYPSKDDYSSSDRLI 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03358 952 ProSiteProfiles Leucine-rich repeat profile. 284 306 IPR001611 GO:0005515
Vifa1g03358 952 Gene3D Phosphorylase Kinase; domain 1 571 680 - -
Vifa1g03358 952 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 576 680 - -
Vifa1g03358 952 SMART serkin_6 605 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03358 952 SUPERFAMILY L domain-like 42 349 - -
Vifa1g03358 952 Gene3D Ribonuclease Inhibitor 248 355 IPR032675 -
Vifa1g03358 952 CDD STKc_IRAK 611 878 - -
Vifa1g03358 952 MobiDBLite consensus disorder prediction 911 952 - -
Vifa1g03358 952 ProSiteProfiles Protein kinase domain profile. 605 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03358 952 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 908 - -
Vifa1g03358 952 Pfam Leucine rich repeat 260 319 IPR001611 GO:0005515
Vifa1g03358 952 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515
Vifa1g03358 952 PRINTS Leucine-rich repeat signature 282 295 - -
Vifa1g03358 952 PRINTS Leucine-rich repeat signature 93 106 - -
Vifa1g03358 952 SUPERFAMILY Protein kinase-like (PK-like) 588 877 IPR011009 -
Vifa1g03358 952 Pfam Malectin domain 386 533 IPR021720 -
Vifa1g03358 952 Gene3D Ribonuclease Inhibitor 15 141 IPR032675 -
Vifa1g03358 952 Gene3D - 383 538 - -
Vifa1g03358 952 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 178 245 - -
Vifa1g03358 952 FunFam Putative LRR receptor-like serine/threonine-protein kinase 681 888 - -
Vifa1g03358 952 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 13 177 - -
Vifa1g03358 952 Pfam Protein tyrosine and serine/threonine kinase 608 875 IPR001245 GO:0004672|GO:0006468
Vifa1g03358 952 Gene3D Transferase(Phosphotransferase) domain 1 681 890 - -
Vifa1g03358 952 SMART LRR_typ_2 282 305 IPR003591 -
Vifa1g03358 952 SMART LRR_typ_2 90 114 IPR003591 -
Vifa1g03358 952 SMART LRR_typ_2 161 184 IPR003591 -
Vifa1g03358 952 SMART LRR_typ_2 328 351 IPR003591 -
Vifa1g03358 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 727 739 IPR008271 GO:0004672|GO:0006468
Vifa1g03358 952 Gene3D Ribonuclease Inhibitor 145 247 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03358 Vifa-Chr1 525545851 525555955 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03358 1 943 Receptor kinase-like Gene Family AT1G53440 62.525 0.0 1198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g03358 PK_Tyr_Ser-Thr 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03358 - - gmx:121173337 1436.78