Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03345 ATGACGTCAGGGACGAGACAACCAACATGGAAGGAGAGGGAGAATAACAAAAGGAGAGAGAGAAGAAGAAGAGCCATAGCTGCGAAGATCTTCTCTGGTTTGAGAATGTACGGTAACTACAAGCTTCCTAAACACTGCGACAACAACGAAGTTCTCAAAGCTCTCTGTAATGAAGCCGGTTGGATCGTTGAACCGGATGGCACAACGTATCGTAAGGGATGCAAGCCTATGGAGCGCATGGATGTGGTAGGTGGTTCTGCAATGGGAAGCCCATGTTCATCTTACCATCCAAGTCCCTGTGCTTCCTACAACCCAAGCCCTGGCTCTTCTTCCTTCCCTAGTCCGCGGTCATCCTCCCATGCTATAAATCCTAATGGTGACGCCAATTCCCTAATTCCATGGCTCAAAAACCTCTCATCTGGATCATCATCAGCATCCTCTTCCAAGCTTCCGCAGCTATATGTTCATACTGGTTCCATCAGTGCTCCTGTCACTCCTCCACTTAGCTCTCCAACTGCCCGATCATCTCAGACGAAAGCTGACATCTGGGAGGATCAGTCCACTCGTCCTGGTTGGGGCGGGCAGCAGTACTCCTTCCTGCCTTCCTCCACTCCTCCAAGCCCAGGTCGCCAAGTTCTTGACCCAGATTGGTTTGCTGGGATTAGGATGCCCCAGGGTGGTCCAACTTCTCCTACATTTAGCCTAGTGGCTTCTAATCCATTTGGCTTCAGGGAAGAGGTTTTCTGTGGCAGTGATTCCCGCATGTGGACACCTGGACAAAGTGGGACGTGTTCTCCAGCTATAGCTGCAGGCTCTGATCATAATGCTGACATACCAATGGCCGAAGCTATTTCAGACGAATTCGCCTTCGGAAACAGTGCAGCTGGTATGGTAAAGCCTTGGGAAGGAGAGAGGATCCATGAAGATTCCGGTTCAGATGATTTAGAGCTTACTCTTGGCAGCTCAAAGACCAGATGA 978 0.502 MTSGTRQPTWKERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGCKPMERMDVVGGSAMGSPCSSYHPSPCASYNPSPGSSSFPSPRSSSHAINPNGDANSLIPWLKNLSSGSSSASSSKLPQLYVHTGSISAPVTPPLSSPTARSSQTKADIWEDQSTRPGWGGQQYSFLPSSTPPSPGRQVLDPDWFAGIRMPQGGPTSPTFSLVASNPFGFREEVFCGSDSRMWTPGQSGTCSPAIAAGSDHNADIPMAEAISDEFAFGNSAAGMVKPWEGERIHEDSGSDDLELTLGSSKTR 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03345 325 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g03345 325 MobiDBLite consensus disorder prediction 160 180 - -
Vifa1g03345 325 MobiDBLite consensus disorder prediction 303 325 - -
Vifa1g03345 325 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Vifa1g03345 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 325 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vifa1g03345 325 MobiDBLite consensus disorder prediction 97 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03345 Vifa-Chr1 521718143 521721449 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03345 1 325 BZR Transcription Factor Family AT1G78700 68.955 1.15e-133 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vifa1g03345 BES1_N 3.1e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03345 - - cill:122280541 528.094