Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03341 ATGGCTTCCACTTTCCGTGACCGTACGTCGGAGTTCCGATCACTGACGGAGACTCTAAAGAAGACTGGCGGTGGAGAAGGAGTCACCGCACCGCCGAATCACCAACCGTCTACGTCTCAAGGTTCCTATTCAAGATCTGAATTCAACCGAAAGGCATCACAAATAGGATTAGGAATCCACGAAACCTCACAGAAAATCGCCAGACTCGCTAATTTGGCGAAGAAATCGTCTCTGTTTAATGATCCAATTATGGAGATTCAAGAACTGACTGCATTGATTAAGACTGATATAACAACGTTGAATTCGGCTGTTTTAAATTTGCAAAATATTCAGAAATTTGATTTGGCTGATGAGAATTACTCGGAAGATAGGGTTGTGCATTCTAATGCTGTTTGTAATGACTTGAAGAACAAGCTTATGGGAGCCACAAAGCATCTTCAAGATGTTTTAACTACTAGGACAGAGAACATCAAGGCTCATGAGAGTAGGAAGCAGATATTTTCCAAGAACCCTTTACAGCATCAGCCAAAGCCAACTACTGAGCCGCCACCTTGGTCAAATTCAACAAATGCATTTGAAACAGAGAGTTTGCTACAAACACCAGGACCACCATCAAATGGAATTCCTCCAGCTGGCAATCAGCTAAGACGAAGGTTAGCTGTGGACAACACTCCATCTCAGCAAATGGAGATGTCTTTGGTACAACAGGTTGTTCCTCGGCAGGAAGACTATGCCCAAAGTCGATCAACTGCTCTGCACAATGTAGAATCTACTATTACTGAACTTAGTGGAATCTTCTCCCATTTGGCTACGATGGTTGCCCATCAAGGAGAGCTAGCTATCAGGATTGATGACAACATGGATGAGTCATTGGCAAATGTTGAAGGAGCCCGCAGTTCTTTATTGAGGCATCTCAACCAAATATCATCAAATAGATGGCTTATGATCAAAATATTTGCCATTTTGATATTCTTTCTGATGATCTTCATATTCTTTGTAGCCTAA 1005 0.4219 MASTFRDRTSEFRSLTETLKKTGGGEGVTAPPNHQPSTSQGSYSRSEFNRKASQIGLGIHETSQKIARLANLAKKSSLFNDPIMEIQELTALIKTDITTLNSAVLNLQNIQKFDLADENYSEDRVVHSNAVCNDLKNKLMGATKHLQDVLTTRTENIKAHESRKQIFSKNPLQHQPKPTTEPPPWSNSTNAFETESLLQTPGPPSNGIPPAGNQLRRRLAVDNTPSQQMEMSLVQQVVPRQEDYAQSRSTALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGARSSLLRHLNQISSNRWLMIKIFAILIFFLMIFIFFVA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03341 334 SMART tSNARE_6 237 304 IPR000727 -
Vifa1g03341 334 MobiDBLite consensus disorder prediction 31 47 - -
Vifa1g03341 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 242 304 IPR000727 -
Vifa1g03341 334 PANTHER SYNTAXIN 46 328 IPR045242 -
Vifa1g03341 334 MobiDBLite consensus disorder prediction 19 47 - -
Vifa1g03341 334 Pfam SNARE domain 279 330 IPR000727 -
Vifa1g03341 334 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 4 21 IPR021538 -
Vifa1g03341 334 SUPERFAMILY t-snare proteins 44 297 IPR010989 GO:0016020|GO:0016192
Vifa1g03341 334 Gene3D - 42 297 - -
Vifa1g03341 334 CDD SNARE_syntaxin5 245 320 - -
Vifa1g03341 334 ProSitePatterns Syntaxin / epimorphin family signature. 248 287 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa1g03341 334 MobiDBLite consensus disorder prediction 159 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03341 Vifa-Chr1 521215237 521220590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03341 1 334 SNARE and Associated Proteins AT5G05760 60.920 1.58e-142 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03341 K08490 - gmx:100777383 466.077