Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03322 ATGGAGGATCTTGGTTGGTTTGCTACAAATGGGAAAAAGGCAATGGAAGAAGAGCTTATAAGAGGACGTGACATGGCAAATCAACTACTTGAAGTACTTACTTTTGATGATAAATCTAACATTAGTAGACAAGTCAAAGGGTCAAACTCAAAATCATCAAAACTCTTACCCTTATCTATTGCTCAAGATCTTGTTCGAGAGGTACTTAAATCATTCACAAATACACTTTTATATCTGAACAGTAGACAAGACTCCAATGATGTTCTTATAACAGTTAGAGATTTATCTTTCTCAACTAATTGCCCTAAGATGGATGAGTATGATGGAGCTTACAAACAACTCAAAACTCTAAACACCGAAAGTCCAAAAGTATCGAAAAAGAGAAAGTTATCTGCACCAACTTGGGAAAGAACCACCTCAATATTGATTGATGATGGTCATACATGGAGAAAATATGGACAAAAAACGATAACAAATTCCAAATACTTGAGGAACTACTATAGGTGTACGCACAGCGATCAACGTTGTGAAGCTATGAAACATGTTCAAAGAATTCAAGGGAATCCTCCATTGTATAAGATTACATATTATGGTTATCACATTTGCAAGAGCTATTTTCAATCAAATATAATTTCTAAACCCGTTTCTTCATCTCACTCTTCTATATTACTTTGTTTTGATAACAACATTTCAAGTAAACAAGAAGATATGTTACGACCGTCACCACCATTGCCGCCACCGTCACCACCATTGGCGCCACCATCACCACTTGTTGTATCTTCAGAAGGGGATCCTGTGGAAGTAATTAAAGAGGATCATTTTTCTCAAAATCAGTTTTTGCTTTCTGAGGGCCTCCAATTATGGGAATCTGATGTTTTTTTAGAGTTGTTGAGAGATGTCAAAATGTTATAA 912 0.3575 MEDLGWFATNGKKAMEEELIRGRDMANQLLEVLTFDDKSNISRQVKGSNSKSSKLLPLSIAQDLVREVLKSFTNTLLYLNSRQDSNDVLITVRDLSFSTNCPKMDEYDGAYKQLKTLNTESPKVSKKRKLSAPTWERTTSILIDDGHTWRKYGQKTITNSKYLRNYYRCTHSDQRCEAMKHVQRIQGNPPLYKITYYGYHICKSYFQSNIISKPVSSSHSSILLCFDNNISSKQEDMLRPSPPLPPPSPPLAPPSPLVVSSEGDPVEVIKEDHFSQNQFLLSEGLQLWESDVFLELLRDVKML 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03322 303 SUPERFAMILY WRKY DNA-binding domain 138 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g03322 303 ProSiteProfiles WRKY domain profile. 138 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03322 303 SMART WRKY_cls 143 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03322 303 Gene3D WRKY domain 132 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g03322 303 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 40 218 IPR044810 GO:0003700
Vifa1g03322 303 MobiDBLite consensus disorder prediction 235 257 - -
Vifa1g03322 303 MobiDBLite consensus disorder prediction 239 256 - -
Vifa1g03322 303 Pfam WRKY DNA -binding domain 144 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03322 Vifa-Chr1 517414798 517417829 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03322 12 203 WRKY Transcription Factor Family AT5G01900 35.751 4.22e-24 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g03322 WRKY 8.9e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03322 - - psat:127081893 437.958