Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03317 ATGGAGAATCTGGTTTGGCTTTCTACTAATGGCAAAAAGGCAATGGAAGAAGAGCTTTTAAAAGGACGTAACATGGCAAATAAACTACTTGCTTTTGTTGATAAGTCAAATATTATTAAGGAAGTCAATGGGTCAAACTCAAAATCATTATCAACCTTAATAGTCGGAGATCTTGTGCGACAAATTCTCAAATCATTGTCAAATACTCTTGTGCTTTTGAACAACAATCAATACTCCAATCATGTTCCTCTAACTGGTAGAGATATTTCAGATGGAGCTTACAAGAAACTCAAGACCCTCAACACCAAACAACAAAAAGGGTCGAACAAGAGAAAGTCAATTTCAGCAAATGGGGAAAAGACTAGCTCAATATTGATTGATGATGGTTATACATGGAGAAAGTACGGACAAAAAAAGATAACAAAAGCCAAATACTACAGGAGCTACTATAGGTGCACACACAGCGATCAGCATTGTGAAGCAATGAAACATGTTCAAAGAACTCAAGAGAATCCTCCATTGTACACTACTACATATTATGGTTATCACACTTGCAAAAGCTCTTTCCATTCCGACATAAATTTGGAACCAGTTATATCTTCCGTTGACTCTTCTGTATTGCTTAGTTTTGATAACAACATTCTAATTAAACAAGAATACCAGCTTCCACCACCATTGCCATTGCTATCGCCACCACTTTTTGCTTCAATAAAAGAGGACCCCATGGAAGAGATTCATGATGATTATTTTGATCAAAATCAATTGTTCTTACCTGAGAACATCCTGCCATGTAACTTTGAAATTTATTTCGATTATTTGAAACATACCACTATGCTATTAACGACTGAATCATTTGAATTTGAGAATGTTTATGATCAGTTTGCATTTTGA 891 0.3524 MENLVWLSTNGKKAMEEELLKGRNMANKLLAFVDKSNIIKEVNGSNSKSLSTLIVGDLVRQILKSLSNTLVLLNNNQYSNHVPLTGRDISDGAYKKLKTLNTKQQKGSNKRKSISANGEKTSSILIDDGYTWRKYGQKKITKAKYYRSYYRCTHSDQHCEAMKHVQRTQENPPLYTTTYYGYHTCKSSFHSDINLEPVISSVDSSVLLSFDNNILIKQEYQLPPPLPLLSPPLFASIKEDPMEEIHDDYFDQNQLFLPENILPCNFEIYFDYLKHTTMLLTTESFEFENVYDQFAF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03317 296 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 31 192 IPR044810 GO:0003700
Vifa1g03317 296 Pfam WRKY DNA -binding domain 127 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03317 296 Gene3D WRKY domain 109 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g03317 296 SUPERFAMILY WRKY DNA-binding domain 123 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g03317 296 ProSiteProfiles WRKY domain profile. 121 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g03317 296 SMART WRKY_cls 126 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03317 Vifa-Chr1 516391256 516394200 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03317 7 186 WRKY Transcription Factor Family AT5G01900 33.690 1.10e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g03317 WRKY 5.9e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03317 - - psat:127081893 293.123