Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03293 ATGATTTATGGTAGATGTGCCGCTTGCAAGAGTCAAAGAAGAAAATGTCCTTCTGATTGCATTTTCTTTCCTTATTTCCCTGCCAATGATCCTCAAAGATTTGCTTATGTTCACAAAATCTATGGTGGTAGCAATGTTGGAAAAATGCTTAAGCAATTGCCTTATTATGTAAGAGAGCATGCTGCAAATAGTTTGTATTTAGAAGCAAAATATGAATCAAACCTCAATTTGAAGTTTGTGATGCCACAAAGTAACTACATGGCACAGTTTCAATGGCCTAATCAAACTCCTAATTGA 297 0.3535 MIYGRCAACKSQRRKCPSDCIFFPYFPANDPQRFAYVHKIYGGSNVGKMLKQLPYYVREHAANSLYLEAKYESNLNLKFVMPQSNYMAQFQWPNQTPN 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03293 98 Pfam Lateral organ boundaries (LOB) domain 5 72 IPR004883 -
Vifa1g03293 98 ProSiteProfiles LOB domain profile. 4 98 IPR004883 -
Vifa1g03293 98 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03293 Vifa-Chr1 512227633 512228206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03293 5 70 AS2 family AT3G26660 65.152 1.03e-27 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g03293 LOB 6.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03293 - - mtr:25497793 127.102