Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03278 ATGCCCTCAGCTCAAGATCCATTCTACGTCGTCAAAGAAGATATTCAAGATTCTATTGATAGGTTGCAATCTAATTTTCACCAATGGGAAAATACTTCGGATACTGGGGAGCATTTGAATCTTTCAAAGGAAGTTCTTGCTGCTTGTGGAAGTATTGAGTGGCAGGTGGACGAATTGGACAAAGCAATTTCTGTAGCATCTAGAGATCCTTCTTGGTATGGCATTGATGAAAAGGAGATTGAAAACCGAAGGAGGTGGACCAGCAATGCTCGCACACAGGTGCGCACAGTTAAGAAAACAGTGGAAGCTAGAAAGGGATCAAATACAACGACTCATGCTAATATGAATGGTATGCACAGGGAGTTAATGAGGCATCCTGATTCTCATCAAAGTACATCCAAGCCCAACCAATATGCCGCTGGGGATAATGATGATTTCATAGAATCAGAGTCAGATAGGCAGATGCTTCTTATAAAGAGGCAAGATGAGGAGTTAGACGAGCTTAGTTTAAGCGTACAAAGAATTGGAGGTGTTGGACTTACGATACATGAAGAGCTCCTAGGGCAGGAAAAGATTCTAGATGAGCTTGGCAATGAGATGGACAGTACATCCCATCGTCTAGATTTTGTCCAAAAAAGAGTAGCAATGGTGATGAAGAAGGCAAGTGTAAAGGGACAGATGATGATGTTATGTGCTTTGCTGGCTCTGTTCATTTTCCTTTTTATCTTGGTATTCTTCACCTAG 744 0.418 MPSAQDPFYVVKEDIQDSIDRLQSNFHQWENTSDTGEHLNLSKEVLAACGSIEWQVDELDKAISVASRDPSWYGIDEKEIENRRRWTSNARTQVRTVKKTVEARKGSNTTTHANMNGMHRELMRHPDSHQSTSKPNQYAAGDNDDFIESESDRQMLLIKRQDEELDELSLSVQRIGGVGLTIHEELLGQEKILDELGNEMDSTSHRLDFVQKRVAMVMKKASVKGQMMMLCALLALFIFLFILVFFT 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03278 247 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Vifa1g03278 247 Gene3D - 2 104 - -
Vifa1g03278 247 SMART tSNARE_6 150 217 IPR000727 -
Vifa1g03278 247 Gene3D - 162 226 - -
Vifa1g03278 247 FunFam Syntaxin 10 3 104 - -
Vifa1g03278 247 Coils Coil 12 32 - -
Vifa1g03278 247 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Vifa1g03278 247 PANTHER GOLGI SNARE BET1-RELATED 123 243 - -
Vifa1g03278 247 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Vifa1g03278 247 CDD SNARE_Qc 158 215 - -
Vifa1g03278 247 SUPERFAMILY SNARE fusion complex 153 217 - -
Vifa1g03278 247 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 155 217 IPR000727 -
Vifa1g03278 247 FunFam syntaxin-61 isoform X1 158 219 - -
Vifa1g03278 247 Coils Coil 193 213 - -
Vifa1g03278 247 Pfam SNARE domain 192 243 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03278 Vifa-Chr1 510635570 510642091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03278 55 247 SNARE and Associated Proteins AT1G28490 67.876 5.27e-91 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03278 K08500 - gmx:100793612 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03278 1 510635570 510642091 Vifa1g03278 1 510635570 510642091 PCT