Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03276 ATGGGTATTTGTTTGAGCAAAAAAGAATCAGCCCCAGATCAAAGACATGTTGATTCTGGTAATCCCAATCACAATCATAATCATAATCCCAATCACAATCATAACCAAAATCACAATCAAAATCAGAATCAGAATCACAAGAATCATGAACCCCATGTGAATCAATCAAAACCAAAAGACCCTTCTCAACATGCCTCAAGTACAAAACCTGTTCAAAGATCAGCTACAAACACAATCCTTGGCAAACAATTTGAAGATGTGAAACAATTTTACACAATTGGGAAAGAATTAGGGAGAGGACAGTTTGGTGTGACATATAGATGCACTCAAAATTCAACTCATTTGAAATATGCTTGCAAATCGATTTCGAAGAGGAAACTTGTTAATAAAGCTGATAAGGAAGATATAAAGAGAGAGGTGCAACTCATGCAACATATGAGTGGACAACCAAACATTGTTGAGTTTAAAGGTGCTTATGAGGATAGAAATCATGTTCATGTTGTTATGGAACTTTGTGCCGGTGGTGAACTTTTCGATAGGATTATTGCGAAAGGACATTATAGTGAAAGAGCCGCGTCTTCGATTTGTAGACAGATTGTTAATGTTGTTCATATTTGTCATTTCATGGGTGTGATGCATAGAGATTTGAAGCCAGAGAATTTCTTGCTGTCTAGTAAGGATGATAAGGCGATTATCAAGGTTACTGATTTCGGCTTGTCGGTTTTCATCGAAGAAGGAAAGATATATCAAGATATAGTTGGTAGTGCATATTATGTTGCGCCAGAAGTTCTACGTCGTAGATATGGGAAGGAAGTAGATATATGGAGTACAGGAGTTATATTGTATATCTTACTTTGTGGCGTGCCTCCGTTTTGGGCAGAGACGGAAAAGGGAATATTTGAGGCCATACTGCAAGGTCATATTGACTTTGAATGTCGTCCATGGCCAAGCATATCAAACAGTGCTAAGGACCTTGTTCGTCGGATGCTTATACAAGATCCGAAGAAACGCATCACTGCTACTCAGGTTCTAGAGCATCCATGGCTTAAAGAAGGTGGAAGTGCTTCTGATAAGCCTATAGACAGTGCAGTACTTTCTAGAATGAAGCAATTCAGAGCGATGAATAAACTAAAAAAACTCGCTCTCAAGGTAATTGCTGAAAATCTTTCTTCGGAAGAGATCCAAGGTTTGAAGCAAATGTTTACAAACATGGACACAGACAAAAGTGGTACAATCACATATGAGGAATTGAGAACAGGATTGCAAAGACTCGGCTCAAAGCTTACCGAAGCTGAAGTTCTTCAGCTTATGGAAGCTGCTGATGTAGATGGAAATGGCACAATCGATTACATAGAATTCATCACTGCTACTATGCATCGACATAGGTTAGAAAGAGATGAACATCTTTACAAGGCCTTCCAACATTTCGATAAAGACAATAGCGGTTTTATTACAAGAGATGAACTGGAAACCGCCATGAAGGAATATGGTATGGGCGACGATAACACAATCAAGGAAATTATATCTGAAGTTGACGCCGATAATGATGGTAGAATCAACTATGAAGAATTTTCTACAATGATGAGGAGTGGAGTCCAACAACAAGACAAACTATTCTAA 1620 0.384 MGICLSKKESAPDQRHVDSGNPNHNHNHNPNHNHNQNHNQNQNQNHKNHEPHVNQSKPKDPSQHASSTKPVQRSATNTILGKQFEDVKQFYTIGKELGRGQFGVTYRCTQNSTHLKYACKSISKRKLVNKADKEDIKREVQLMQHMSGQPNIVEFKGAYEDRNHVHVVMELCAGGELFDRIIAKGHYSERAASSICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDDKAIIKVTDFGLSVFIEEGKIYQDIVGSAYYVAPEVLRRRYGKEVDIWSTGVILYILLCGVPPFWAETEKGIFEAILQGHIDFECRPWPSISNSAKDLVRRMLIQDPKKRITATQVLEHPWLKEGGSASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSSEEIQGLKQMFTNMDTDKSGTITYEELRTGLQRLGSKLTEAEVLQLMEAADVDGNGTIDYIEFITATMHRHRLERDEHLYKAFQHFDKDNSGFITRDELETAMKEYGMGDDNTIKEIISEVDADNDGRINYEEFSTMMRSGVQQQDKLF 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03276 539 Gene3D Phosphorylase Kinase; domain 1 92 176 - -
Vifa1g03276 539 ProSiteProfiles EF-hand calcium-binding domain profile. 504 534 IPR002048 GO:0005509
Vifa1g03276 539 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Vifa1g03276 539 CDD STKc_CAMK 90 348 - -
Vifa1g03276 539 SUPERFAMILY Protein kinase-like (PK-like) 90 356 IPR011009 -
Vifa1g03276 539 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Vifa1g03276 539 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Vifa1g03276 539 SMART efh_1 396 424 IPR002048 GO:0005509
Vifa1g03276 539 SMART efh_1 432 460 IPR002048 GO:0005509
Vifa1g03276 539 SMART efh_1 468 496 IPR002048 GO:0005509
Vifa1g03276 539 SMART efh_1 503 531 IPR002048 GO:0005509
Vifa1g03276 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Vifa1g03276 539 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Vifa1g03276 539 Gene3D - 357 535 - -
Vifa1g03276 539 FunFam Calcium-dependent protein kinase 1 93 176 - -
Vifa1g03276 539 Pfam EF-hand domain pair 467 529 IPR002048 GO:0005509
Vifa1g03276 539 Pfam EF-hand domain pair 397 457 IPR002048 GO:0005509
Vifa1g03276 539 ProSitePatterns EF-hand calcium-binding domain. 512 524 IPR018247 -
Vifa1g03276 539 CDD EFh 471 529 IPR002048 GO:0005509
Vifa1g03276 539 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Vifa1g03276 539 ProSiteProfiles Protein kinase domain profile. 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03276 539 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Vifa1g03276 539 SMART serkin_6 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03276 539 MobiDBLite consensus disorder prediction 23 49 - -
Vifa1g03276 539 Gene3D Transferase(Phosphotransferase) domain 1 177 356 - -
Vifa1g03276 539 SUPERFAMILY EF-hand 388 528 IPR011992 -
Vifa1g03276 539 MobiDBLite consensus disorder prediction 1 77 - -
Vifa1g03276 539 MobiDBLite consensus disorder prediction 58 77 - -
Vifa1g03276 539 FunFam Calcium-dependent protein kinase 1 357 532 - -
Vifa1g03276 539 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Vifa1g03276 539 Pfam Protein kinase domain 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03276 539 PANTHER SERINE/THREONINE-PROTEIN KINASE 83 524 - -
Vifa1g03276 539 FunFam calcium-dependent protein kinase 1 177 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03276 Vifa-Chr1 510516255 510519430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03276 70 539 EF-hand Containing Proteins AT3G20410 80.932 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa1g03276 Pkinase 1.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03276 K13412 - gmx:100794852 837.41